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CTGCAAACAGAGCAATTGGGTTGTATGGAGCAAGTTTTCTTCAAAGCCATATAAAAGACTCTAAGAATCTGTCTATTTTGACACATTGCAACACTGGAAGgtactgtcctgtatttttttaatatatatttatatctccttccgcccccacccccctttctctctctctctctctctctctctcatatggatctcgtgca...
species | Vitis vinifera |
transcript | Vv11s0016g00830.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATAAAAGACTCTAAGAATCTGTCTATTTTGACACATTGCAACACTGGAAG TCTTGCAACAGCTGGATATGGTACTGCTCTCGGTGTAATCCCGTTC-GTTCEST: gi|30252087|gb|CB968726.1|CB968726
genomic: ATAAAAGACTCTAAGAATCTGTCTATTTTGACACATTGCAACACTGGAAGgtactgtcct ... gtttcaacagTCTTGCAACAGCTGGATATGGTACTGCTCTCGGTGTAATCC-GTTCCGTTC
EST: ATAAAAAACTCTAAGAATCTGTCTATTTTGACACATTGCAACACTGGAAG TCTTGCAACAGCTGGATATGGTACTGCTCTCGGTGTAATCCGTTCCGTTCAEST: gi|30133085|gb|CB918424.1|CB918424
genomic: ATAAAAGACTCTAAGAATCTGTCTATTTTGACACATTGCAACACTGGAAGgtactgtcct ... gtttcaacagTCTTGCAACAGCTGGATATGGTACTGCTCTCGGTGTAATCCGTTCCGTTCA
EST: ATAAAAGACTCTAAGAATCTGTCTATTTTGACACATTGCAACACTGGAAG TCTTGCAACAGCTGGATATGGTACTGCTCTCGGTGTAATCCGTTCCGTTCAEST: gi|110363814|gb|EC927433.1|EC927433
genomic: ATAAAAGACTCTAAGAATCTGTCTATTTTGACACATTGCAACACTGGAAGgtactgtcct ... gtttcaacagTCTTGCAACAGCTGGATATGGTACTGCTCTCGGTGTAATCCGTTCCGTTCA
EST: TTTTGACACATTGCAACACTGGAAG TCTTGCAACAGCTGGATATGGTACTGCTCTCGGTGTAATCCGTTCCGTTCAEST: gi|110420049|gb|EC986310.1|EC986310
genomic: TTTTGACACATTGCAACACTGGAAGgtactgtcct ... gtttcaacagTCTTGCAACAGCTGGATATGGTACTGCTCTCGGTGTAATCCGTTCCGTTCA
EST: ATTTTGACACATTGCAACACTGGAAG TCTTGCAACAGCTGGATATGGTACTGCTCTCGGTGTAATCCGTTCCGTTCAEST: gi|161721519|gb|FC070079.1|FC070079
genomic: ATTTTGACACATTGCAACACTGGAAGgtactgtcct ... gtttcaacagTCTTGCAACAGCTGGATATGGTACTGCTCTCGGTGTAATCCGTTCCGTTCA
EST: ATAAAAAACTCTAAGAATCTGTCTATTTTGACACATTGCAACACTGGAAG TCTTGCAACAGCTGGATATGGTACTGCTCTCGGTGTAATCCGEST: gi|110707370|gb|EE083712.1|EE083712
genomic: ATAAAAGACTCTAAGAATCTGTCTATTTTGACACATTGCAACACTGGAAGgtactgtcct ... gtttcaacagTCTTGCAACAGCTGGATATGGTACTGCTCTCGGTGTAATCCG
EST: ATAAAAGACTCTAAGAATCTGTCTATTTTGACACATTGCAACACTGGAAG TCTTGGCA-CAGCTGGATATGGTACTGCTCTCGGTGTAATCCGTTCCGTTCEST: gi|110366059|gb|EC929706.1|EC929706
genomic: ATAAAAGACTCTAAGAATCTGTCTATTTTGACACATTGCAACACTGGAAGgtactgtcct ... gtttcaacagTCTTG-CAACAGCTGGATATGGTACTGCTCTCGGTGTAATCCGTTCCGTTC
EST: ATAAAAAACTCTAAGAATCTGTCTATTTTGACACATTGCAACACTGGAAG TCTTGCAACAGCTGGATATGGTACTGCTCTCGGTGTAATCCGTTCCGTTCA
genomic: ATAAAAGACTCTAAGAATCTGTCTATTTTGACACATTGCAACACTGGAAGgtactgtcct ... gtttcaacagTCTTGCAACAGCTGGATATGGTACTGCTCTCGGTGTAATCCGTTCCGTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCAAACAGAGCAATTGGGTTGTATGGAGCAAGTTTTCTTCAAAGCCATATAAAAGACTCTAAGAATCTGTCTATTTTGACACATTGCAACACTGGAAGgtactgtcctgtatttttttaatatatatttatatctccttccgcccccacccccctttctctctctctctctctctctctctcatatggatctcgtgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc