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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGTTGAGAGTCATTGCTGAACTTAGGCATGGGGATCTTTTTCACTCTGCCAATATTGTGTCAAGgtgcgttgaaatgcatgctatactatttaattacaattatttttttaactcccaaggtcagaaaacttttcttgatgtcaccctttttgctgttgttgaattgttaatttgcattcatcatattaattgtacttcagtaaataatgaacaaactgttgagttgagtatttcccatattttcttgcag

Basic information

species Vitis vinifera
transcript Vv10s0523g00030.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0523g00030.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G126795_T01 (Zea mays), 5'ss of exon 7
TCGGTTGAGAGTCATTGCTGAACTTAGGCATGGGGATCTTTTTCACTCTGCCAATATTGTGTCAAGgtgcgttgaaatgcatgctatactatttaattacaattatttttttaactcccaaggtcagaaaacttttcttgatgtcaccctttttgctgttgttgaattgttaatttgcattcatcatattaattgtacttcagtaaataatgaacaaactgttgagttgagtatttcccatattttcttgcag
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TCGTCTACGTGTCATTGCGGAACTAAGACATGGAGACTTGTTTCACTCTGCCAATATTGTGTCCAGgtgtgtag-----tatgtagtccaatgtaggcacagtttcttatctatgctttaaaatgtaactagcagcagaaccagtgcagtttcagggatagataaatt--taa--------------------------------------------------------------------------------