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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAGTCTTCAGGGATAAGTTTCATTTGTGATCTGAATGACAACATTCCAGCTCCTTGGCCTTCTTCATCTCAATTACCAGCTTCATCATGCAATAAAAgtatggcttatctgtaacttttgttcgtttagatgaggttcctgttgttaccttttcttctatgagcaaaactactctttgctaaagaaagtgattatttccttctttcctgtcacatttcttcttgatttatgtctgaacttgttgaattgcag

Basic information

species Vitis vinifera
transcript Vv10s0116g01850.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g01850.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G27540.1 (Glycine max), 5'ss of exon 6
GACAAGTCTTCAGGGATAAGTTTCATTTGTGATCTGAATGACAACATTCCAGCTCCTTGGCCTTCTTCATCTCAATTACCAGCTTCATCATGCAATAAAAgtatggcttatctgt--aacttttgttcgtttagatgaggttcctgttgttaccttttcttctatgagcaaaactactctttgctaaagaaagtgattatttccttctttcctgtcacatttcttcttgatttatgtctgaacttgttgaattgcag
||||    ||| ||||| || ||| | |||||||| ||||| || ||||||||||||||||||||| |||||||| |  |  ||||||||||||||||| ||| |  |   ||||  ||  ||| |    ||| | ||||       ||||   | ||  | |||    |     | || | |  ||||||    ||  |||  ||                                                   
GACAGTGTTTCTGGGATCAGCTTCCTCTGTGATCTAAATGATAATATTCCAGCTCCTTGGCCTTCTACATCTCAACTGACTTCTTCATCATGCAATAAATgtacgtataccctgttgaaaatttatataattataagaggaga--actgttctttatttatttatt--tattttcattcatcg--aaagaagaaaatccttttatt---------------------------------------------------

upper sequence: Vv10s0116g01850.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G11420.1 (Glycine max), 5'ss of exon 6
GACAAGTCTTCAGGGATAAGTTTCATTTGTGATCTGAATGACAACATTCCAGCTCCTTGGCCTTCTTCATCTCAATTACCAGCTTCATCATGCAATAAAAgta--tggcttatctgtaacttttgttcgtttagatgaggttcctgttgttaccttttcttctatgagcaaaactactctttgctaaagaaagtgattatttccttctttcctgtcacatttcttcttgatttatgtctgaacttgttgaattgcag
||||    ||| ||||| || ||| |||||||||| ||||| || ||||||||||||||||||||| |||||||| |  |  ||||||| ||||||||| |||  | |    | |  ||  ||| |    ||| | ||||          | |  ||| || ||| |       | |  |||    |   |||  | |  ||   | ||                                                
GACAGTATTTCTGGGATCAGCTTCCTTTGTGATCTAAATGATAATATTCCAGCTCCTTGGCCTTCTACATCTCAACTGACTTCTTCATCGTGCAATAAATgtacgtagaccctattgaaaatttatataattataagagg-----aaaactgctctttattttattatt----tttccatttatcgagagaagaaaatccttttatttt------------------------------------------------

upper sequence: Vv10s0116g01850.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G61900.2 (Arabidopsis thaliana), 5'ss of exon 6
GACAAGTCTTCAGGGATAAGTTTCATTTGTGATCTGAATGACAACATTCCAGCTCCTTGGCCTTCTTCATCTCAATTACCAGCTTCATCATGCAATAAAAgtatggcttatctgtaacttttgttcgtttagatgaggttcctgttgttaccttttcttctatgagcaaaactactctttgctaaagaaagtgattatttccttctttcctgtcacatttcttcttgatttatgtctgaacttgttgaattgcag
|| ||     | |||||||| || | |||||| || |||||||||||||| ||||| |||||||| || |||| ||   |||| ||  | || || ||| ||  |  |  | | |    ||| |    ||   |   |    | |||   |  ||| ||   | |     | |||  ||| ||  |         |  ||| ||     |||| |                                        
GATAAAGACACGGGGATAAGCTTTACTTGTGACCTCAATGACAACATTCCCGCTCCGTGGCCTTCATCTTCTCTATCCTCAGCCTCTACCTGTAAAAAACgtgcg--tggtttatcgtatttatcttcttgatttccgacatttttgcctctctttttttcttaacttgca-tacgtttttctgta---------ttgttcttttgcagctgttag---------------------------------------

upper sequence: Vv10s0116g01850.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G61900.1 (Arabidopsis thaliana), 5'ss of exon 6
GACAAGTCTTCAGGGATAAGTTTCATTTGTGATCTGAATGACAACATTCCAGCTCCTTGGCCTTCTTCATCTCAATTACCAGCTTCATCATGCAATAAAAgtatggcttatctgtaacttttgttcgtttagatgaggttcctgttgttaccttttcttctatgagcaaaactactctttgctaaagaaagtgattatttccttctttcctgtcacatttcttcttgatttatgtctgaacttgttgaattgcag
|| ||     | |||||||| || | |||||| || |||||||||||||| ||||| |||||||| || |||| ||   |||| ||  | || || ||| ||  |  |  | | |    ||| |    ||   |   |    | |||   |  ||| ||   | |     | |||  ||| ||  |     || |  ||| |                                                     
GATAAAGACACGGGGATAAGCTTTACTTGTGACCTCAATGACAACATTCCCGCTCCGTGGCCTTCATCTTCTCTATCCTCAGCCTCTACCTGTAAAAAACgtgcg--tggtttatcgtatttatcttcttgatttccgacatttttgcctctctttttttcttaacttgca-tacgtttttctgtat----tgttcttttgcag---------------------------------------------------