Sequence
atgc intronic sequence ATGC exonic sequenceAGATGGCACTCAAATTCCTCTATCAATTGTTTACCGAAAGGATCTTGTGAAACTTGATGGATCTGATCCATTACTTCTTTATGGCTATGGTTCATATGAGgtaacttgtaattttgtggattaattaacttgcttctacttgtgccaagaggatttactaccctgttcctcgagataaatcattttttggagaaaataaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0071g00930.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G23350.1 (Glycine max), 5'ss of exon 6
AGATGGCACTCAAATTCCTCTATCAATTGTTTACCGAAAGGATCTTGTGAAACTTGATGGATCTGATCCATTACTTCTTTATGGCTATGGTTCATATGAGgtaacttgtaattttgtggattaattaacttgcttctacttgtgccaaga--ggatttactaccctgttcctcgagataaatcattttttgga-gaaaataaa--
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GGATGGAACTTTGATTCCCATATCAATTGTTTACCGAAAAGATCTTGTGAAACTAGATGGATCAGATCCATTACTACTCTATGGATATGGATCGTATGAGgtaa-----aagaatagaaattaattgaattgcatacaataataccaatgctgaatccaatgctttgatttgtattggaaactggatgatggatgaaagttgctg
upper sequence: Vv10s0071g00930.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G43460.1 (Glycine max), 5'ss of exon 10
-AGATGGCACTCAAATTCCTCTATCAATTGTTTACCGAAAGGATCTTGTGAAACTTGATGGATCTGATCCATTACTTCTTTATGGCTATGGTTCATATGAGgtaacttg-taattttgtggattaattaacttgcttctacttgtgccaagaggatttactaccctgttcctcgagataaatcattttttggagaaaataaa--------------------------------------------------
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TGGGCACTATTTGA-TTCCCATATTGATTGTTTACCGAAAAGATCTTGTGAAACTTGATGGATCAGACCCATTATTACTCTATGGATATGGATTGTATGAGgtaaaagaatagaaatttatataaattgaattgcatacaacaataacaatgctgaatccaatgctttgatttgtattggatgatggatgaaagttgctgctgtttctcaatcagtatttaatgcttactacttgtactgaattgcatatag
upper sequence: Vv10s0071g00930.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G50380.1 (Arabidopsis thaliana), 5'ss of exon 6
AGATGGCACTCAAATTCCTCTATCAATTGTTTACCGAAAGGATCTTGTGAAACTTGATGGATCTGATCCATTACTTCTTTATGGCTATGGTTCATATGAGgtaacttgtaattttgtggattaattaacttgcttctacttgtgccaagaggatttactaccctgttcctcgag-ataaatcattttttggagaaaataaa-
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AGACGGAACTCAAATTCCAATGTCTATTGTGTATAACAAAAAACTTGCAAAGCTTGATGGATCTGATCCATTACTCCTTTATGGATATGGTTCATATGAGgtatttt-tagtt--gaagcttttatggttcccagattctcggtcct------tttacttctttccaacggaactataaaatactctttatctttattacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30125089|gb|CB910428.1|CB910428EST: AACTTGATGGATCTGATCCATTACTTCTTTATGGCTATGGTTCATATGAG ATTTGCATAGATCCGAGTTTCAAAGCTTCAAGGCTCTCTCTATTAGATCGA
genomic: AACTTGATGGATCTGATCCATTACTTCTTTATGGCTATGGTTCATATGAGgtaacttgta ... ttgccaacagATTTGCATAGATCCAAGTTTCAAAGCTTCAAGGCTCTCTCTATTAGATCGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGATGGCACTCAAATTCCTCTATCAATTGTTTACCGAAAGGATCTTGTGAAACTTGATGGATCTGATCCATTACTTCTTTATGGCTATGGTTCATATGAGgtaacttgtaattttgtggattaattaacttgcttctacttgtgccaagaggatttactaccctgttcctcgagataaatcattttttggagaaaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa