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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGTTAATCAAGGAACTCTGGTAGTTTTTAATTTGGATCCATCAGTTTCAAATGATGATCTCCGCCAAATATTTGGGGCTTATGGGGAGGTTAAAGAGgtgataaatttaattgccttttcaattatttattcctttcttcattttccttgcttcatgcgattctttgtaatctattgtgcatgtcataaaagcag

Basic information

species Vitis vinifera
transcript Vv10s0003g02670.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g02670.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G23420.1 (Glycine max), 5'ss of exon 6
GGATGTTAATCAAGGAACTCTGGTAGTTTTTAATTTGGATCCATCAGTTTCAAATGATGATCTCCGCCAAATATTTGGGGCTTATGGGGAGGTTAAAGAGgtgataaatttaattgccttttcaattatttattcctttct--tcattttccttgcttcatgcgattc---tttgtaatctattgtgcatgtcataaaagcag
|||| | || || |||||  |||||||||| |||||||||||||| ||||||||||| || || || |||||||||||||||||||| ||||| ||||||||||| | ||||       || |   | | ||| ||| ||   |   | |   ||  |  |    ||     ||   ||  ||| |  |||||     ||   
GGATATCAACCAGGGAACATTGGTAGTTTTCAATTTGGATCCATCTGTTTCAAATGAAGACCTGCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGgtgattattttatcctttcttgctgctttgtatccctgtcacgtgtgtgtgtatgtgttctatattttaagcttaagattaattatcaatgtctctgcag---

upper sequence: Vv10s0003g02670.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA09G11630.1 (Glycine max), 5'ss of exon 4
GGATGTTAATCAAGGAACTCTGGTAGTTTTTAATTTGGATCCATCAGTTTCAAATGATGATCTCCGCCAAATATTTGGGGCTTATGGGGAGGTTAAAGAGgtgataaatttaattgccttttcaattatttattcctttcttcattttccttgctt-catgcgattctt-----tgtaatctattgtgcatgtcataaaagcag
|||| | || || |||||  |||||||||| |||||||||||||| ||||||||||| || || || |||||||||||||||||||| ||||| ||||||||||| | ||||       || |   | | ||| ||| ||    || |   |   |   | | ||| ||     |   ||  ||| |  |||||     ||   
GGATATCAACCAGGGAACATTGGTAGTTTTCAATTTGGATCCATCTGTTTCAAATGAAGACCTGCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGgtgattattttatcctttcttgctgctttgtatccctctcacatttgtgtgtatatgtgttctatttttaaaacttagattaattatcaatgtctctgcag---