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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTTTGGTGTAGAAGGAGCAATGGAAAAAGGGCGAAAATGGATCTTGGACCATGGGGGTGCAACTGCAATAACTTCTTGGGGGAAAATGTGGCTTTCTgtatgaactcaaatttttttggcttgagctaaaatattaattgttttgtaattgtgagttgacatttgatatgcttctgatggccatag

Basic information

species Vitis vinifera
transcript Vv09s0054g01110.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g01110.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os02g04710.1 (Oryza sativa), 5'ss of exon 4
AGGTTTTGGTGTAGAAGGAGCAATGGAAAAAGGGCGAAAATGGATCTTGGACCATGGGGGTGCAACTGCAATAACTTCTTGGGGGAAAATGTGGCTTTCTgtatgaactcaaa--------tttttttggcttga--gctaaaata---ttaattgttttgtaattgtgagttgacatttgatatgcttctgatggccatag
      | | |  || ||||| ||||| ||||| ||||||||||| || ||||||||||| ||||||   || || || ||||| ||  | |||||||| ||| | | | ||         | | | |  |||||  |||  ||||   | |  || ||| ||| ||| |    ||  || |||| |  || ||      ||
GCCAGATAGCGGCGATGGAGCTATGGAGAAAGGACGAAAATGGATTTTAGACCATGGGGGAGCAACTTATATTACATCATGGGGCAAGTTTTGGCTTTCGgtagggagttaacacttcctctctctgtatcttgaccgctgtaataatctaacctggtttttaaatgtaa--caactctttatattcc-ctaatcatgtcag

upper sequence: Vv09s0054g01110.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G065494_T01 (Zea mays), 5'ss of exon 4
AGGTTTTGGTGTAGAAGGAGCAATGGAAAAAGGGCGAAAATGGATCTTGGACCATGGGGGTGCAACTGCAATAACTTCTTGGGGGAAAATGTGGCTTTCTgtatgaactcaaatttttttggcttgagc-taaaatattaattgttttgtaattgtgagttgacatttgatatgcttctga-tggccatag
|     | ||| ||| ||||||||||| ||||| ||||| |||||||| |||||||| || |||||    ||||| || ||||||||  | ||||| || ||| | | |  | | || ||   |||    | |     |  |  |||  |   | ||  || |    |  ||     |||  |    | ||
ACCAGATAGTGGAGATGGAGCAATGGAGAAAGGCCGAAACTGGATCTTAGACCATGGCGGAGCAACATATATAACATCCTGGGGGAAGTTTTGGCTCTCGgtagggaattgactcttattcatttgtttatcagtcgcttctattttcttggatctgctttaattccttctaattacctggcttattaaag