Sequence
atgc intronic sequence ATGC exonic sequenceCACAAGGTCGCTACTTATCACGGAATTTGAACCGAGTGGTCAATGAGATCATATCTAAAGCTATGGCTGCATTTGCTTCAACAGGGATGGATCCATACAGgtatgttactgaagcttcttcagtttgatccactagcatcgagttcaatgcttattattactgtttagttggagacttttatcaaaattatattatttgg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0018g01920.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G23840.1 (Glycine max), 5'ss of exon 7
CACAAGGTCGCTACTTATCACGGAATTTGAACCGAGTGGTCAATGAGATCATATCTAAAGCTATGGCTGCATTTGCTTCAACAGGGATGGATCCATACAGgtatgttactgaagcttc--ttcagtttgatccactagcatcgagttcaatgct--tattattactgtttagttggagactttta--tcaaaattatattatttgg-----------------------
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CCCATGGTCGGTACTTGTCAAGGAATTTGCAACGAATTGTCAATGAGATCATAACAAAAGCGATGGCAGCATTTTCTGCAACAGGGATGGATCCATATAGgtaggctactggtgtcgccatcgacattttatcattaaagaaaatatctttgcttttgcaattgtttttctattcaaagttgtgaaattaaatctgtaagagtctaatatatatatattatattgccag
upper sequence: Vv09s0018g01920.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G00570.1 (Glycine max), 5'ss of exon 8
CACAAGGTCGCTACTTATCACGGAATTTGAACCGAGTGGTCAATGAGATCATATCTAAAGCTATGGCTGCATTTGCTTCAACAGGGATGGATCCATACAGgtatgttactgaagct-tcttcagtttgatccactagcatcgagttcaatgcttattattactgtttagttggagacttttatcaaaattatattatttgg-----------------------------------
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CCCATGGTCGGTACTTGTCTAGGAATTTGCAACGAATTGTCAATGAGATTATAACAAAAGCAATGGCAGCATTTTCTGCAACAGGGATGGATCCATATGGgtaggtcactgttgttgccatcaacat--tctatcattattctttaaagaaaatatctttgcatttgcaattgtttttctattcaaagttgtggcattaaatctgtaagagtctgatatgtatattctgttgccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110700119|gb|EE077795.1|EE077795EST: ATATCTAAAGCTATGGCTGCATTTGCTTCAACAGGGATGGATCCATACAG TGTACTTCCGGAAGATGAGTGGTTTACTGATATATGTCAAGAA--AATGGA
genomic: ATATCTAAAGCTATGGCTGCATTTGCTTCAACAGGGATGGATCCATACAGgtatgttact ... tttctggcagTGTACTTCCGGAAGATGAGTGGTTTACTGATATATGTCAAGAAGCAATGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACAAGGTCGCTACTTATCACGGAATTTGAACCGAGTGGTCAATGAGATCATATCTAAAGCTATGGCTGCATTTGCTTCAACAGGGATGGATCCATACAGgtatgttactgaagcttcttcagtttgatccactagcatcgagttcaatgcttattattactgtttagttggagacttttatcaaaattatattatttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatta