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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAAAATATTGTTGGAAACTAAACCAGCACCAAAGGTTGTAACTGTTGTGAATCCTGGTAACCCATCTGGGACCTACATTCCAGAGCCTCTGCTTAAGgtctctctctcccctctgtgtcgttgtgtgtgtgtgtgcacgtgtgcctgcttacactgttagaataaattttagaaaatagttgaactttcgttttccttttttcagtttgtttcaaacctaactggtcctttgttttctttaagtag

Basic information

species Vitis vinifera
transcript Vv09s0002g05250.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g05250.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G43830.2 (Glycine max), 5'ss of exon 6
GGAAAAAATATTGTTGGAAACTAAACCAGCACCAAAGGTTGTAACTGTTGTGAATCCTGGTAACCCATCTGGGACCTACATTCCAGAGCCTCTGCTTAAGgtctctctctc-ccctctgtgtcgttgtgtgtgtgtgtgcacgtgt-gcctgcttacactgttagaataaattttagaaaatagttgaactttcgttttccttttttcagtttgtttcaaacctaactggtcctttgttttctttaagtag
||||| |||||| |  |||||||||||| | |||||| |||| |||||||| ||||| || || |||||||| || |||||||||||||| || || |||||||||||||| | |||| | ||  | | | |     || |  | |   | |||   |   ||  |  |  | || |           |   |  | ||||                                                  
GGAAAGAATATTATCAGAAACTAAACCACCTCCAAAGCTTGTTACTGTTGTAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctctctctctctttctctctctctctcccactgaaattatcaacagctagtatgattttagaacttcttgggtggccaccaga---taatattccca------------------------------------------------

upper sequence: Vv09s0002g05250.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G43830.3 (Glycine max), 5'ss of exon 5
GGAAAAAATATTGTTGGAAACTAAACCAGCACCAAAGGTTGTAACTGTTGTGAATCCTGGTAACCCATCTGGGACCTACATTCCAGAGCCTCTGCTTAAGgtctctctctccc-ctctgtgtcgttgtgtgtgtgtgtgcacgtgt-gcctgcttacactgttagaataaattttagaaaatagttg---aactttcgttttccttttttcagtttgtttcaaacctaac--tggtcctttgttttctttaagtag-------------------------------------------
||||| |||||| |  |||||||||||| | |||||| |||| |||||||| ||||| || || |||||||| || |||||||||||||| || || |||||||||||||| | |||| | ||  | | | |     || |  | |   | |||   |   ||  |  |  | || |             ||  |||        | |     ||      ||   || |  | ||  ||| |||| |||   ||                                            
GGAAAGAATATTATCAGAAACTAAACCACCTCCAAAGCTTGTTACTGTTGTAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctctctctctctttctctctctctctcccactgaaattatcaacagctagtatgattttagaacttcttgggtggccaccagataatattcccaaagaatatgctgattgaccataacagtagcagtagtttttttttttttttttataaaaaaaattataaaatttctgagtattttctcttatttgatcag

upper sequence: Vv09s0002g05250.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G01520.1 (Glycine max), 5'ss of exon 6
GGAAAAAATATTGTTGGAAACTAAACCAGCACCAAAGGTTGTAACTGTTGTGAATCCTGGTAACCCATCTGGGACCTACATTCCAGAGCCTCTGCTTAAGgtctctctctc-------ccctctgtgtc-----------------gttgtgtgtgtg------------tgtgcacgtgtgcctgct------tacactgttagaataaattt-tagaaaatagttg--aactttcgttttccttttttcagtttgtttcaaacctaactggtcctttgttttctttaagtag
||||| |||||| |  |||| |||||| || |||||| |||| |||||||| ||||| || || |||||||| || |||||||||||||| || || ||||||||||||||       |||||||  |                   || |    |||            | | |  ||||| |  |       ||  |    ||||||   |  | ||  |||  ||  || |  | ||||   || |  |  |  ||  |||  |     ||  ||| | || ||| |  ||
GGAAAGAATATTATCAGAAAATAAACCGGCTCCAAAGCTTGTTACTGTTGTAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctctctcactctccctctgaatttatcaacagctagtacgattttagaagtgatccttttttaatcttcttgtgtggccaccagataatattccccaagaatatgctgattgaccataactgtaaagtaactttttttgttataaaaatatttataaaatttctgagtattttctcttatttgatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161714897|gb|FC064519.1|FC064519
EST:     TGAATCCTGGTAACCCATCTGGGACCTACATTCCAGAGCCTCTGCTTAAG                         AGGTTTGCAGATCTCTGCAGAAATGCTGGATCTTGGCTTGTTGTAGATAAT
genomic: TGAATCCTGGTAACCCATCTGGGACCTACATTCCAGAGCCTCTGCTTAAGgtctctctct ... ctttaagtagAGGTTTGCAGATCTCTGCAGAAATGCTGGATCTTGGCTTGTTGTAGATAAT
EST: gi|349816605|gb|FQ399594.1|FQ399594
EST:     TGAATCCTGGTAACCCATCTGGGACCTACATTCCAGAGCCTCTGCTTAAG                         AGGTTTGCAGATCTCTGCAGAAATGCTGGATCTTGGCTTGTTGTAGATAAT
genomic: TGAATCCTGGTAACCCATCTGGGACCTACATTCCAGAGCCTCTGCTTAAGgtctctctct ... ctttaagtagAGGTTTGCAGATCTCTGCAGAAATGCTGGATCTTGGCTTGTTGTAGATAAT
EST: gi|110410711|gb|EC976403.1|EC976403
EST:     TGAATCCTGGTAACCCATCTGGGACCTACATTCCAGAGCCTCTGCTTAAG                         AGGTTTGCAGATCTCTGCAGAAATGCTGGATCTTGGCTTGTTGTAGATAAT
genomic: TGAATCCTGGTAACCCATCTGGGACCTACATTCCAGAGCCTCTGCTTAAGgtctctctct ... ctttaagtagAGGTTTGCAGATCTCTGCAGAAATGCTGGATCTTGGCTTGTTGTAGATAAT
EST: gi|110378361|gb|EC943489.1|EC943489
EST:     TGAATCCTGGTAACCCATCTGGGACCTACATTCCAGAGCCTCTGCTTAAG                         AGGTTTGCAGATCTCTGCAGAAATGCTGGATCTTGGCTTGTTGTAGATAAT
genomic: TGAATCCTGGTAACCCATCTGGGACCTACATTCCAGAGCCTCTGCTTAAGgtctctctct ... ctttaagtagAGGTTTGCAGATCTCTGCAGAAATGCTGGATCTTGGCTTGTTGTAGATAAT
EST: gi|26257746|gb|CA808809.1|CA808809
EST:     AATCCTGGTAACCCATCTGGGACCTACATTCCCAGAGCCTCTGCTTTAAG                         AGGTTTGTAGATCTCTGCAGAAATG
genomic: A-TCCTGGTAACCCATCTGGGACCTACATTCC-AGAGCCTCTGCTT-AAGgtctctctct ... ctttaagtagAGGTTTGCAGATCTCTGCAGAAATG
EST: gi|110693324|gb|EE069456.1|EE069456
EST:     TGAATCCTGGTAACCCATCTGGGACCTACATTCCAGAGCCTCTGCTTAAG                         AGGTTTGCAGATCTCTGCAGAAATGCTGGATCTTGGCTTGTTGTAGATAAT
genomic: TGAATCCTGGTAACCCATCTGGGACCTACATTCCAGAGCCTCTGCTTAAGgtctctctct ... ctttaagtagAGGTTTGCAGATCTCTGCAGAAATGCTGGATCTTGGCTTGTTGTAGATAAT
EST: gi|110394684|gb|EC959919.1|EC959919
EST:     TGAATCCTGGTAACCCATCTGGGACCTACATTCCAGAGCCTCTGCTTAAG                         AGGTTTGCAGATCTCTGCAGAAATGCTGGATCTTGGCTTGTTGTAGATAAT
genomic: TGAATCCTGGTAACCCATCTGGGACCTACATTCCAGAGCCTCTGCTTAAGgtctctctct ... ctttaagtagAGGTTTGCAGATCTCTGCAGAAATGCTGGATCTTGGCTTGTTGTAGATAAT