Sequence
atgc intronic sequence ATGC exonic sequenceATAATGATTGTATACGTTGACATTACTGAGGACAACCTTGCAAAGCCCTTCTTGACTTTGTTTGGGCTTGAAGACTCAGAAGACACTATAgttagtttctcaataagtgatctttcttttagctgctgatttatgaattatgctgttacatcatttacttaaactttagaagtaaattgctgcatggatgtttcctctgtgtgcctgatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g04250.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G01880.1 (Glycine max), 5'ss of exon 6
ATAATGATTGTATACGTTGACATTACTGAGGACAACCTTGCAAAGCCCTTCTTGACTTTGTTTGGGCTTGAAGACTCAGAAGACACTATAgttagtttctcaataagtgatctttcttttagctgctgatttatgaattatgctgttacatcatttacttaaactttagaagtaaattgctgcatggatgtttcctctgtgtgcctgatag
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ATAATGTTTATATATGTGGATATTAATGATGAGAACCTTGCAAAGCCCTTCTTAACATTGTTTGGTCTTGAAGAATCAAAAAATACTGTGgttagtttatgagttaataac-------------aatgatttgt---tcggattgtt---ttattagtttagataattgtggcaa-ctgatg--tgatttacttcttggtgtgccgaatag
upper sequence: Vv09s0002g04250.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G43430.1 (Glycine max), 5'ss of exon 6
ATAATGATTGTATACGTTGACATTACTGAGGACAACCTTGCAAAGCCCTTCTTGACTTTGTTTGGGCTTGAAGACTCAGAAGACACTATAgttagtttctcaataagtgatctttcttttagctgctgatttatgaattatgctgttacatcatttacttaaactttagaagtaaattgctgcatggatgtttcctctgtgtgcctgatag
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ATAATGTTTATATATGTGGATATTAATGACGAGAACCTTGCAAAGCCCTTCTTAACATTGTTTGGTCTTGAGGAATCAAAAAATACTGTGGTTAgtttatgagttaataacagtgatttg---ttcagattgcttaatta----gtttagatatttttggcaact---gatttgatttacttcttgg-tgtgccaaatacgtag-------
upper sequence: Vv09s0002g04250.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G43430.2 (Glycine max), 5'ss of exon 6
ATAATGATTGTATACGTTGACATTACTGAGGACAACCTTGCAAAGCCCTTCTTGACTTTGTTTGGGCTTGAAGACTCAGAAGACACTATAgttagtttctcaataagtgatctttcttttagctgctgatttatgaattatgctgttacatcatttacttaaactttagaagtaaattgctgcatggatgtttcctctgtgtgcctgatag
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ATAATGTTTATATATGTGGATATTAATGACGAGAACCTTGCAAAGCCCTTCTTAACATTGTTTGGTCTTGAGGAATCAAAAAATACTGTGgttagtttatgagttaataacagtgatttg---ttcagattgcttaatta----gtttagatatttttggcaact---gatttgatttacttcttgg-tgtgccaaatacg----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71857296|gb|DT006351.1|DT006351EST: CAAAGCCCTTCTTGACTTTGTTTGGGCTTGAAGACTCAGAAGACACTATA GTGACTGCTTTTGATAACAAAATCAGCTCAAAGTATTTGTTAGAGTCAGAT
genomic: CAAAGCCCTTCTTGACTTTGTTTGGGCTTGAAGACTCAGAAGACACTATAgttagtttct ... tgcctgatagGTGACTGCTTTTGATAACAAAATCAGCTCAAAGTATTTGTTAGAGTCAGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATAATGATTGTATACGTTGACATTACTGAGGACAACCTTGCAAAGCCCTTCTTGACTTTGTTTGGGCTTGAAGACTCAGAAGACACTATAgttagtttctcaataagtgatctttcttttagctgctgatttatgaattatgctgttacatcatttacttaaactttagaagtaaattgctgcatggatgtttcctctgtgtgcctgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA