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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGTTCGTGAACACGGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCCgtgagtttttcgatcctcattctctcatcccacatgtaaatttgtctactaccctgagatctgtattgaaatttttgtgtttgttgttttcag

Basic information

species Vitis vinifera
transcript Vv09s0002g03410.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110422054|gb|EC988366.1|EC988366
EST:     GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCC                         TTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAA
genomic: GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCCgtgagttttt ... ttgttttcagTTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAA
EST: gi|110418706|gb|EC984872.1|EC984872
EST:     GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCC                         TTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAA
genomic: GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCCgtgagttttt ... ttgttttcagTTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAA
EST: gi|30251350|gb|CB969083.1|CB969083
EST:     GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCC                         TTGGTAGCAGCAAGCAAGAAAAGGCCCCCCTTGACTCTGCATTGAAATGAA
genomic: GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCCgtgagttttt ... ttgttttcagTTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAA
EST: gi|30251355|gb|CB969088.1|CB969088
EST:     GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCC                         TTGGTAGCAGCAAGCAAGAAAAGGCACCCCTTGACTCTGCATTGAAATGAA
genomic: GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCCgtgagttttt ... ttgttttcagTTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAA
EST: gi|161721537|gb|FC069747.1|FC069747
EST:     GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCC                         TTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAA
genomic: GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCCgtgagttttt ... ttgttttcagTTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAA
EST: gi|110386232|gb|EC950813.1|EC950813
EST:     GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCC                         TTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAA
genomic: GGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCCgtgagttttt ... ttgttttcagTTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAA
EST: gi|156736126|gb|EV240247.1|EV240247
EST:     GTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAAACTT-CTGCTCTATGCC                         TTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGGAATGAA
genomic: GTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAA-CTTTCTGCTCTATGCCgtgagttttt ... ttgttttcagTTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATGTTCGTGAACACGGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCCgtgagtttttcgatcctcattctctcatcccacatgtaaatttgtctactaccctgagatctgtattgaaatttttgtgtttgttgttttcag

- - - - - - - -  TGAAGA
- - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - AGAGCT