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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATCAACATGGAGTGGGGCAACTTTAGGTCATCACATCTACCATTAACAGAGTATGACCGTGCAATGGATATTGATAGTTTAAACCCTGGTGAACAGgtgattgtatatatttaaatttttgtagttcctaagtctttgctttgcttctgtgtttgtcatgatgctacacatattctaagatttttaatgcttttccacag

Basic information

species Vitis vinifera
transcript Vv09s0002g03390.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g03390.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G21450.1 (Glycine max), 5'ss of exon 6
GTTATCAACATGGAGTGGGGCAACTTTAGGTCATCACATCTACCATTAACAGAGTATGACCGTGCAATGGATATTGATAGTTTAAACCCTGGTGAACAGgtgattgtatatatttaaatttttgtagttcctaagtctttgctttgcttctgtgtttgtcatgatgctacacatattctaagatttttaatgcttttccacag
| |||||||||||||||||| |||||  |||||||||| || |||||||| ||||||||| ||||| | |||  ||| ||||| | ||||||||| ||||||| | |           ||| |||   | || ||      ||||    |||  ||  | |||| |||| | | ||| |    |||| |||  |  | ||   
GCTATCAACATGGAGTGGGGAAACTTCCGGTCATCACACCTTCCATTAACTGAGTATGACTGTGCATTAGATGCTGAGAGTTTCAGCCCTGGTGATCAGgtgagttt-----------tttgtgttacttcttagctccatcttt----ctgccttaataatgaggctatata-attgt----ttttcaatcatacttcag--

upper sequence: Vv09s0002g03390.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G01790.1 (Glycine max), 5'ss of exon 9
GTTATCAACATGGAGTGGGGCAACTTTAGGTCATCACATCTACCATTAACAGAGTATGACCGTGCAATGGATATTGATAGTTTAAACCCTGGTGAACAGgtgattgtatatatttaaatttttgtagttcctaagtctttgctttgcttctgtgtttgtcatgatgctacacatattctaagatttttaatgcttttccacag
| |||||||||||||||||| |||||  |||||||||| || ||||| || ||||||||  ||||| | |||   || |||||||| ||| |||| |||||||  || | | ||      ||  ||| |||    ||||   | ||| |  ||   ||   | ||   |    | ||| |  ||  || |             
GCTATCAACATGGAGTGGGGAAACTTCCGGTCATCACACCTTCCATTGACTGAGTATGATTGTGCATTAGATGCCGAGAGTTTAAATCCTAGTGATCAGgtga--gtttgtgttg----cttattagctcc---atcttg--tctgccttagtaaatgaggttatataatcatttttcaaccataattcag------------