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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAGgttggccttctttcaagttcatattactgaagaaacatatccaattactattttaatcatatttatggtttttatgatgctctgcag

Basic information

species Vitis vinifera
transcript Vv09s0002g02940.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02940.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G21300.1 (Glycine max), 5'ss of exon 6
GGGACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAGgttggcct-tctttcaagttcatattactgaagaaacatatccaattactattttaatcatatttatggtttttatgatgctc----tgcag
|||||| |||||||||||| ||    |||||||||||||||||||| ||||||||    || ||  |  | ||  | ||   |  | || | |   ||  | ||||  ||| | |    ||   | | |     ||    | |||
GGGACATATTCCCTGTTGGTTGCAGATTTGATGAGTCCATTGTTCACCACAAGgtaaatctgtcaattcattttcttttttgggtggaaaacaaaaaaaaa-tattaaaattaaacacctgacatgtgttgcattcccacttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30302571|gb|CB979365.1|CB979365
EST:     ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAG                         CATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
genomic: ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAGgttggccttc ... tgctctgcagCATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
EST: gi|110358571|gb|EC922880.1|EC922880
EST:     ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAG                         CATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
genomic: ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAGgttggccttc ... tgctctgcagCATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
EST: gi|110357458|gb|EC921014.1|EC921014
EST:     ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAG                         CATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
genomic: ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAGgttggccttc ... tgctctgcagCATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
EST: gi|110357825|gb|EC921593.1|EC921593
EST:     ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAG                         CATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
genomic: ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAGgttggccttc ... tgctctgcagCATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
EST: gi|30302644|gb|CB979438.1|CB979438
EST:     ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAG                         CATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACACCACTAAGTAT
genomic: ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAGgttggccttc ... tgctctgcagCATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
EST: gi|30302699|gb|CB979493.1|CB979493
EST:     ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAG                         CATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
genomic: ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAGgttggccttc ... tgctctgcagCATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
EST: gi|110358718|gb|EC923143.1|EC923143
EST:     ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAG                         CATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
genomic: ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAGgttggccttc ... tgctctgcagCATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
EST: gi|110720644|gb|EE096747.1|EE096747
EST:     ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAG                         CATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
genomic: ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAGgttggccttc ... tgctctgcagCATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
EST: gi|30302025|gb|CB978819.1|CB978819
EST:     ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAG                         CATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
genomic: ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAGgttggccttc ... tgctctgcagCATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
EST: gi|110357023|gb|EC920273.1|EC920273
EST:     ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAG                         CATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
genomic: ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAGgttggccttc ... tgctctgcagCATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
EST: gi|45771218|gb|CN007070.1|CN007070
EST:     ACACATTCCCT-TTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAG                         CATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
genomic: ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAGgttggccttc ... tgctctgcagCATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
EST: gi|110358259|gb|EC922343.1|EC922343
EST:     ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAG                         CATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
genomic: ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAGgttggccttc ... tgctctgcagCATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
EST: gi|110726999|gb|EE103284.1|EE103284
EST:     ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAG                         CATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
genomic: ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAGgttggccttc ... tgctctgcagCATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
EST: gi|30302765|gb|CB979559.1|CB979559
EST:     ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAG                         CATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT
genomic: ACACATTCCCTGTTGGGTGTGCTTTTGATGAGTCCATTGTTCATCACAAGgttggccttc ... tgctctgcagCATTTCAAGGAGAGCCCTGACTACTATAATCCTGCTTACAACACTAAGTAT