1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGACAAGACGATGGATGAAATCAATGAGCAAACTGAAAACATGAAACAGATTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAGgtaataactagatcttctttattgatgtttcgtttgatgtatttcttcattactcattaaaatatccacaattttag
species | Vitis vinifera |
transcript | Vv09s0002g02750.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAG GATGAGTTGGAAGCGGANCTTGAGGAACTGGAAGGGGCCGAATTAGAGGAAEST: gi|18458659|gb|BM436937.1|BM436937
genomic: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAGgtaataacta ... acaattttagGATGAGTTGGAAGCGGAGCTTGAGGAACTGGAAGGGGCCGAATTAGAGGAA
EST: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAG GATGAGTTGGAAGCGGAGCTTGAEST: gi|32245051|gb|CD710870.1|CD710870
genomic: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAGgtaataacta ... acaattttagGATGAGTTGGAAGCGGAGCTTGA
EST: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAG GATGAGTTGGAAGCGGAGCTTGAGGAACTGGAAGGGGCCGAATTAGAGGAAEST: gi|110710254|gb|EE086428.1|EE086428
genomic: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAGgtaataacta ... acaattttagGATGAGTTGGAAGCGGAGCTTGAGGAACTGGAAGGGGCCGAATTAGAGGAA
EST: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAG GATGAGTTGGAAGCGGAGCTTGAGGAACTGGAAGGGGCCGAATTANAGGAAEST: gi|30252684|gb|CB970235.1|CB970235
genomic: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAGgtaataacta ... acaattttagGATGAGTTGGAAGCGGAGCTTGAGGAACTGGAAGGGGCCGAATTAGAGGAA
EST: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAG GATGAGTTGGAAGCGGAGCTTGAGGAACTGGAAGGGGCCGAATTAGAGGAAEST: gi|30252607|gb|CB970158.1|CB970158
genomic: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAGgtaataacta ... acaattttagGATGAGTTGGAAGCGGAGCTTGAGGAACTGGAAGGGGCCGAATTAGAGGAA
EST: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAG GATGAGTTGGAAGCGGAGCTTGAGGAACTGGAAGGGGCCGAATTAGAGGGAEST: gi|110687799|gb|EE065623.1|EE065623
genomic: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAGgtaataacta ... acaattttagGATGAGTTGGAAGCGGAGCTTGAGGAACTGGAAGGGGCCGAATTAGAGG-A
EST: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAG GATGAGTTGGAAGCGGAGCTTGAGGAACTGGAAGGGGCCGAATTAGAGGAAEST: gi|110702629|gb|EE078765.1|EE078765
genomic: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAGgtaataacta ... acaattttagGATGAGTTGGAAGCGGAGCTTGAGGAACTGGAAGGGGCCGAATTAGAGGAA
EST: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAG GATGAGTTGGAAGCGGAGCTTGAGGAACTGGAAGGGCCCGAATTAGAGGAAEST: gi|30297117|gb|CB973911.1|CB973911
genomic: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAGgtaataacta ... acaattttagGATGAGTTGGAAGCGGAGCTTGAGGAACTGGAAGGGGCCGAATTAGAGGAA
EST: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAG GATGAGTTGGAAGCTGAGCATGAGGAACTGGAAGGGGCCGAATTAGAGGAAEST: gi|110715669|gb|EE093982.1|EE093982
genomic: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAGgtaataacta ... acaattttagGATGAGTTGGAAGCGGAGCTTGAGGAACTGGAAGGGGCCGAATTAGAGGAA
EST: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAG GATGAGTTGGAAGCGGAGCTTGAGGAACTGGAAGGGGCCGAATTAGAGGAAEST: gi|37188108|gb|CF607459.1|CF607459
genomic: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAGgtaataacta ... acaattttagGATGAGTTGGAAGCGGAGCTTGAGGAACTGGAAGGGGCCGAATTAGAGGAA
EST: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAG GATGAGTTGGAAGCGGAGCTTGAGGAACTGGAAGGGGCCGAATTAGAGGAAEST: gi|32245304|gb|CD711123.1|CD711123
genomic: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAGgtaataacta ... acaattttagGATGAGTTGGAAGCGGAGCTTGAGGAACTGGAAGGGGCCGAATTAGAGGAA
EST: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAG GATGAGTTGGAAGCGGAGCTTGAGGAACTGGAAGGGGCCGAATTAGAGGAA
genomic: TTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAGgtaataacta ... acaattttagGATGAGTTGGAAGCGGAGCTTGAGGAACTGGAAGGGGCCGAATTAGAGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACAAGACGATGGATGAAATCAATGAGCAAACTGAAAACATGAAACAGATTCAGGAAGCACTGTCAACTCCTATTGGTTCAGCAGCTGATTTTGATGAGgtaataactagatcttctttattgatgtttcgtttgatgtatttcttcattactcattaaaatatccacaattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT