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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATACATTTTGCATGGGAAGTCTGCGATCACTGAAATCTTGAGAGGGCTCACATTTCAAATTTCAGCCAATTCCTTTTTCCAAACAAATACACATCAGgtatgctgcatgatgaaattgaatgtactgtcagctcatgctggttttgatattctgtccctatagtctctcactttagtttcctatctagctttttggatgttccttgatagcaaattctaagactttataatgttcag

Basic information

species Vitis vinifera
transcript Vv09s0002g02670.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02670.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G21300.1 (Arabidopsis thaliana), 5'ss of exon 6
GGAATACATTTTGCATGGGAAGTCTGCGATCACTGAAATCTTGAGAGGGCTCACATTTCAAATTTCAGCCAATTCCTTTTTCCAAACAAATACACATCAGgtatgctgcatgatgaaattgaatgtactgtcagctcatgctggttttgatattctgtccctatagtctctcacttta-gtttcctatctagctttttggatgttccttgatagcaaattctaagactttataatgttcag
|||||| | | |  ||||||||  | | ||||| ||  |||| |||||||| |||||||||||||||||||| || || || || || || || ||||||||||   | |  |  ||     |||   | |    | |  ||        || ||    | | | |    | |  |   |||  || | |||                                                 
GGAATATACTCTTTATGGGAAGGATACAATCACAGAGGTCTTAAGAGGGCTTACATTTCAAATTTCAGCCAACTCTTTCTTTCAGACTAACACTCATCAGgtatatggtaccactaagcaacatggtttctt---ttacactcaaaacattaatcacaacttgttgaaaataaaatggtgttcactgtgtag-------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110360458|gb|EC923573.1|EC923573
EST:     AATACACATCAG                         GCAGAGGTGCTGTATAAACTTATAGAAGATTGTGCTGGTCTTAGAGGTGAC
genomic: AATACACATCAGgtatgctgca ... taatgttcagGCAGAGGTGCTGTATAAACTTATAGAAGATTGTGCTGGTCTTAGAGGTGAC
EST: gi|30326526|gb|CD009788.1|CD009788
EST:     TCACATTTCAAATTTCAGCCAACTCCTTTTTCCAAACAAATACACATCAG                         GCAGAGGTGCTCTATAAACTTATAGAAGATTGTGCTGGTCTTAGAGGTGAC
genomic: TCACATTTCAAATTTCAGCCAATTCCTTTTTCCAAACAAATACACATCAGgtatgctgca ... taatgttcagGCAGAGGTGCTGTATAAACTTATAGAAGATTGTGCTGGTCTTAGAGGTGAC
EST: gi|30325919|gb|CD009181.1|CD009181
EST:     TCACATTTCAAATTTCAGCCAACTCCTTTTTCCAAACAAATACACATCAG                         GCAGAGGTGCTCTATAAACTTATAGAAGATTGTGCTGGTCTTAGAGGTGAC
genomic: TCACATTTCAAATTTCAGCCAATTCCTTTTTCCAAACAAATACACATCAGgtatgctgca ... taatgttcagGCAGAGGTGCTGTATAAACTTATAGAAGATTGTGCTGGTCTTAGAGGTGAC
EST: gi|30326234|gb|CD009496.1|CD009496
EST:     TCACATTTCAAATTTCAGCCAACTCCTTTTTCCAAACAAATACACATCAG                         GCAGAGGTGCTCTATAAACTTATAGAAGATTGTGCTGGTCTTAGAGGTGAC
genomic: TCACATTTCAAATTTCAGCCAATTCCTTTTTCCAAACAAATACACATCAGgtatgctgca ... taatgttcagGCAGAGGTGCTGTATAAACTTATAGAAGATTGTGCTGGTCTTAGAGGTGAC
EST: gi|37189974|gb|CF609323.1|CF609323
EST:     TCACATTTCAAATTTCAGCCAACTCCTTTTTCCAAACAAATACACATCAG                         GCAGAGGTGCTCTATAAACTTATAGAAGATTGTGCTGGTCTTAGAGGTGAC
genomic: TCACATTTCAAATTTCAGCCAATTCCTTTTTCCAAACAAATACACATCAGgtatgctgca ... taatgttcagGCAGAGGTGCTGTATAAACTTATAGAAGATTGTGCTGGTCTTAGAGGTGAC