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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCAAGCCCTGAGACCAGCCTGGTGGCTAGATGTCGTAGAGTTTATGCTCATGCTCACGACTATCATATCAATTCTATTTCAAATAATAGgtggttccacaacccatactttaattctcgcatataatgtagctgttctgtttacatatctgttcaccttgttcatgtattgggtttatcttatgacctt...

Basic information

species Vitis vinifera
transcript Vv09s0002g02470.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G165418_T04 (Zea mays), 5'ss of exon 6
GTATCAAGCCCTGAGACCAGCCTGGTGGCTAGATGTCGTAGAGTTTATGCTCATGCTCACGACTATCATATCAATTCTATTTCAAATAATAGgt-ggttccacaacccatactttaattctcgcatataatgtag--ctgttctgtttacatatctgttcac-cttgttcatgtattgggtttatcttatgacctt
||  | || |  ||  | | ||  || |||||||||||  | || | ||||||||||||||| || ||||| ||||||||||||||||||||||  ||      |  |||   | |||| || ||| | | |  |  |  || ||   || | ||  |     | | | ||| | || |     |    ||  | |
GTTACCAGTCTAGAAGCAAACCCTGTTGCTAGATGTCGACGTGTATTTGCTCATGCTCACGATTACCATATAAATTCTATTTCAAATAATAGgtcagtaatttgatacat---tgaattttctcatttcaaggggatccattttgca-acttctccatgggttcatatgcatctctttgagagtttgagtgttcct

upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 6
GTATCAAGCCCTGAGACCAGCCTGGTGGCTAGATGTCGTAGAGTTTATGCTCATGCTCACGACTATCATATCAATTCTATTTCAAATAATAGgtggttc-cacaacc-catactttaattctcgcatataatgtagctgt-tctgtttacatatctgttcaccttgttcatgtattgggtttatcttatgacctt
||  ||| ||  || || ||||| |  || || || || ||||| ||||||||||| || ||||||||||| ||||| || |||||||| ||||  ||| ||  ||  ||    | | || |  ||    ||| |  ||  | |   |       ||||    || ||||  |||||  |||   | |||||   
GTTACAACCCAAGAAACAAGCCTTGCTGCGAGTTGCCGAAGAGTATATGCTCATGCACATGACTATCATATAAATTCAATATCAAATAACAGgtccttcacatcactacaccagtcacttgtatcagtatatgcatttgaatgtaccttagctaatgtttgagtttttcagctattgaatttgagt-atgaca--

upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 6
GTATCAAGCCCTGAGACCAGCCTGGTGGCTAGATGTCGTAGAGTTTATGCTCATGCTCACGACTATCATATCAATTCTATTTCAAATAATAGgt-ggttccacaacccatactttaattctcgcatataatgt--------agctgttctgtttacatatctgttcaccttgttcatgtattgggtttatcttatgacctt
||  || |||  ||    |  |  || || ||| |  |  | || ||||| ||||| || ||||| ||||| ||||| ||||||||||||||||  ||| |       ||| | |   | ||  ||| ||| |        |  || |||  ||  | |  ||| ||  ||  |  | |  | |  ||||||||       
GTTACAGGCCAAGAATTTACTCATGTTGCGAGAAGCAGACGTGTATATGCCCATGCCCATGACTACCATATTAATTCCATTTCAAATAATAGgttagtttccttcatgatattatggatatctaataaaatctgcaaaacgatatgatcttgttgtacaaatgtccagtttccttgtctcattg--ttatctta-------

upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 6
GTATCAAGCCCTGAGACCAGCCTGGTGGCTAGATGTCGTAGAGTTTATGCTCATGCTCACGACTATCATATCAATTCTATTTCAAATAATAGgtggttccacaacccat--actttaattctcg--catataatgtagctgttctgtttacatatctgttcaccttgttcatgtattgggtttatcttatgacctt
||| | |||| |||||||||  |||||||| ||||||||||||| ||||| |||||||| || |||||||| ||||||||||||||||| ||||| ||  | | |        |   ||| | |    |  | ||| |    |   |||     | | || |  |||||      | | ||| || | |       
GTAACCAGCCATGAGACCAGTTTGGTGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAGgtgatttgaaaccttgagggttcctattttaggctgttcagtgtggaatcttgctttttggttatctttat-ttgttttaacgtagtgttgatttgaaagt---

upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G20830.4 (Glycine max), 5'ss of exon 6
GTATCAAGCCCTGAGACCAGCCTGGTGGCTAGATGTCGTAGAGTTTATGCTCATGCTCACGACTATCATATCAATTCTATTTCAAATAATAGgtggttccacaaccca-----tactttaattctcgcatataatgtagctgttctgtttacatatctgttcaccttgttcatgtattgggtttatcttatgacctt
||| | |||| |||||||||  || ||||| |||| |||||||| ||||| |||||||| || |||||||| ||||||||||||||||| ||||| ||  | | | |      | || ||||  ||   |  | |||      |   |||     | | || |  |  || || | | | ||| || | |       
GTAACCAGCCATGAGACCAGTTTGATGGCTCGATGCCGTAGAGTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAGgtgatttgaaacctcgagggttcctataatagtc-tgttcagtgtcaaatcttgctttttggttatctttatttcttttat-tgtagtgttgatttgaaagt---

upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G42800.2 (Glycine max), 5'ss of exon 6
GTATCAAGCCCTGAGACCAGCCTGGTGGCTAGATGTCGTAGAGTTTATGCTCATGCTCACGACTATCATATCAATTCTATTTCAAATAATAGgtggttccacaacccatactttaattctcgcatataatgtagctg-ttctgtttacatatctgttcaccttgttcatgtattgggtttatcttatg-acctt---
|||   |||| ||| |||||| | || ||  |||| |||||||| ||||| |||||||| || ||||| |||||||||||||||||||| ||||  ||  |     | || |||     | ||  ||| | ||||   || || ||  ||   ||   ||| | |   | |   | ||  |||||    |  ||   
GTAAGTAGCCATGAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAGgta-ttttagttttcttattttgtactttgc-catagtctagcaaattttggttgaat---tgagaaccctctgggtattcagtgtcaatcttgcatatattatt

upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 6
GTATCAAGCCCTGAGACCAGCCTGGTGGCTAGATGTCGTAGAGTTTATGCTCATGCTCACGACTATCATATCAATTCTATTTCAAATAATAGgtggttccacaacccatactttaattctcgcatataatgtagctgttctgtttacatatctgttcaccttgttcatgtattgggtttatcttatgacctt----
|||   |||| ||| |||||  | || ||| ||||||||||||| ||||| || ||||| || ||||| |||||||||||||||||||| ||||  ||       |   |  |  |||  |    ||| | ||||   | |   |  | ||  |||| | || |   |  |     || |   |   | |||    
GTAAGTAGCCATGAAACCAGTTTAGTTGCTCGATGTCGTAGAGTGTATGCACACGCTCATGATTATCACATCAATTCTATTTCAAATAACAGgtattttagttttcttaatatgtatttgc---catagtctagcaaattttggttgaaattggttctcattctaattaaaggctattcagtgt-caatcttgcat

upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 8
GTATCAAGCCCTGAGACCAGCCTGGTGGCTAGATGTCGTAGAGTTTATGCTCATGCTCACGACTATCATATCAATTCTATTTCAAATAATAGgtggttccacaacccat---actttaattctcgcatataatg-tagctgttctgtttacatatctgttcaccttgttcatgtattgggtttatcttatgacctt---
||| | |||| |||| | ||||  |||||||||||||| ||||| |||||||||||||| || |||||||| ||||| || |||||||| |||| | |     ||||||   | || || |  |     |  |  ||||    ||| ||   ||| ||| | |       ||  | ||   | |   || | | |    
GTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAGgtaggttattcacccattggaattcaacttgcttccttcttactagcaa--ctgctt---tatttgtccgcaaaaa--attcaatgatgtcactataagtcgtctga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161714603|gb|FC064207.1|FC064207
EST:     GTTTATGCTCATGCTCACGACTATCATATCAATTCTATTTCAAATAATAG                         TGATGGTGAAACATTTATATCAGCTGATGATCTGCGAATAAACCTTTGGAA
genomic: GTTTATGCTCATGCTCACGACTATCATATCAATTCTATTTCAAATAATAGgtggttccac ... ctctctccagTGATGGTGAAACATTTATATCAGCTGATGATCTGCGAATAAACCTTTGGAA