1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATGCAATGCAAATACCAAAAATTTGATTCAAAGTACCACTGTCCCACAAGAAGTTGATGCAGATAAGGATATTGTATTTACATATGATGTTTCCTTCGAGgtaattctttttcgaaatccttgcttgtcttctcccatgatacggttttttttacttgtttttgccttattattttcag
species | Vitis vinifera |
transcript | Vv09s0002g02140.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAGTTGATGCAGATAAGGATATTGTATTTACATATGATGTTTCCTTCGAG GAAAGTAACATCAAATGGGCTTCACGGTGGGATACATACCTCCTTATGAACEST: gi|110719001|gb|EE096474.1|EE096474
genomic: AAGTTGATGCAGATAAGGATATTGTATTTACATATGATGTTTCCTTCGAGgtaattcttt ... ttattttcagGAAAGTAACATCAAATGGGCTTCACGGTGGGATACATACCTCCTTATGAAC
EST: AAGTTGATGCAGATAAGGATATTGTATTTACATATGATGTTTCCTTCGAG GAAAGTAACATCAAATGGGCTTCACGGTGGGATACATACCTCCTTATGAACEST: gi|34546863|gb|CF515095.1|CF515095
genomic: AAGTTGATGCAGATAAGGATATTGTATTTACATATGATGTTTCCTTCGAGgtaattcttt ... ttattttcagGAAAGTAACATCAAATGGGCTTCACGGTGGGATACATACCTCCTTATGAAC
EST: AAGTTGATGCAGATAAGGATATTGTATTTACATATGATGTTTCCTTCGAG GAAAGTAACATCAAATGGGCTTCACGGTGGGATACATACCTCCTTATGAAC
genomic: AAGTTGATGCAGATAAGGATATTGTATTTACATATGATGTTTCCTTCGAGgtaattcttt ... ttattttcagGAAAGTAACATCAAATGGGCTTCACGGTGGGATACATACCTCCTTATGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCAATGCAAATACCAAAAATTTGATTCAAAGTACCACTGTCCCACAAGAAGTTGATGCAGATAAGGATATTGTATTTACATATGATGTTTCCTTCGAGgtaattctttttcgaaatccttgcttgtcttctcccatgatacggttttttttacttgtttttgccttattattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT