1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ACTTGACAGAGGTCCTCAAACGAGAGAGTTGGAGAAGGAAGCTTTAAGATTAGCAAGAGAAATTGAGGGAGAAGAAACCCATGATCTTCACTTAGCAGAGgtgagattaccttgatatcagtttctaccatctcttaaatcctttttattgatctctccaaattttttacatctctcatgttgatctatatgtcag
species | Vitis vinifera |
transcript | Vv09s0002g01560.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TAGCAAGAGAAATTGAGGGAGAAGAAACCCATGATCTTCACTTAGCAGAG GAAAGAGGCCTT-ACCTTCATGCAAATTTTGACATTGATGAGGAGGCAAGAEST: gi|110698235|gb|EE075556.1|EE075556
genomic: TAGCAAGAGAAATTGAGGGAGAAGAAACCCATGATCTTCACTTAGCAGAGgtgagattac ... tatatgtcagGAAAGAGGCCTTCACCTTCATGCAAATTTTGACATTGATGAGGAGGCAAGA
EST: TAGCAAGAGAAATTGAGGGAGAAGAAACCCATGATCTTCACTTAGCAGAG GAAAGAGGCCTTCACCTTCATGCAAATTTTGACATTGATGAGGAGGCAAGA
genomic: TAGCAAGAGAAATTGAGGGAGAAGAAACCCATGATCTTCACTTAGCAGAGgtgagattac ... tatatgtcagGAAAGAGGCCTTCACCTTCATGCAAATTTTGACATTGATGAGGAGGCAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTGACAGAGGTCCTCAAACGAGAGAGTTGGAGAAGGAAGCTTTAAGATTAGCAAGAGAAATTGAGGGAGAAGAAACCCATGATCTTCACTTAGCAGAGgtgagattaccttgatatcagtttctaccatctcttaaatcctttttattgatctctccaaattttttacatctctcatgttgatctatatgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA