Sequence
atgc intronic sequence ATGC exonic sequenceATATATACAGAGAATTGGGTGAATTCACCTGCACAACAGGAAGATAATTCATGGCAAGCATTTGTTTTTGTACCAAAAGACAACTGGTATATTACAAAGgcaagttctgtgctcctcaagctcatttgtgtaatgtgttgatataacagacctcactgtcatattggactatcatactactgtagcttacagatttgaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g00680.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os01g52720.1 (Oryza sativa), 5'ss of exon 7
ATATATACAGAGAATTGGGTGAATTCACCTGCACAACAGGAAGATAATTCATGGCAAGCATTTGTTTTTGTACCAAAAGACAACTGGTATATTACAAAGgcaagttctgtgctcctcaagctcatttgtgtaatgtgt--tgatataacagacctcactgtcatattggactatcatactactgtagcttacagatttgaa
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ATATACACAGAGAACTGGGTGAATTCACCTGGACAACAGGAAGATAATTCGTGGCAAGCCTTTGTGTACTTACCCCAGGACAGATGGCAAATCATGAAGgtaatttcaattcg----aagttgaaagatatggtttttgatgatacgacagcacttgtcctttctttcag-------------------------------
upper sequence: Vv09s0002g00680.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G04830.1 (Glycine max), 5'ss of exon 5
ATATATACAGAGAATTGGGTGAATTCACCTGCACAACAGGAAGATAATTCATGGCAAGCATTTGTTTTTGTACCAAAAGACAACTGGTATATTACAAAGgcaagttctg--tgctcctcaa-gctcatttgtgtaatgtgttgatataacagacctcactgtcatattggactatcatactactgtagctta-cagatttgaa
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ATCTACACAGAGAATTGGGTCAATTCACCTGGACAGATGGAAGATAATTCATGGCAAGCTTTTGTTTATGTGCCTGAAGGCAACTGGTACATTACCAAGgtaagttctatttgcatctcactgcttacat-tgtaatgactcatgattggtggtcttg-tgaaaacctgcaattttgtaggatgtctgctcaattaatttg--
upper sequence: Vv09s0002g00680.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G01410.1 (Glycine max), 5'ss of exon 5
ATATATACAGAGAATTGGGTGAATTCACCTGCACAACAGGAAGATAATTCATGGCAAGCATTTGTTTTTGTACCAAAAGACAACTGGTATATTACAAAGgcaagttctg--tgctcctcaa-gctcatttgtgtaatgtgttgatataacagacctcactgtcatattggactatcatactactgtagcttacagatttgaa-
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ATCTACACGGAGAATTGGGTCAATTCACCTGGACAGATGGAAGATAATTCATGGCAAGCTTTTGTTTATGTGCCTGAAGGAAACTGGTATATCATGAAGgtaagttctatttgcatctcactgcttacat-tgtaatgtctc---atgattgactatgctttcatattgtgttgtgaaaacctgcaattttattaagatgtct
upper sequence: Vv09s0002g00680.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G01410.2 (Glycine max), 5'ss of exon 5
-ATATATACAGAGAATTGGGTGAATTCACCTGCACAACAGGAAGATAATTCATGGCAAGCATTTGTTTTTGTACCAAAAGACAACTGGTATATTACAAAGgcaagttctg--tgctcctcaa-gctcatttgtgtaatgtgttgatataacagacctcactgtcatattggactatcatactactgtagcttacagatttgaa-
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GATCTACACGGAGAATTGGGTCAATTCACCTGGACAGATGGAAGATAATTCATGGCAAGCTTTTGTTTATGTGCCTGAAGGAAACTGGTATATCATGAAGgtaagttctatttgcatctcactgcttacat-tgtaatgtctc---atgattgactatgctttcatattgtgttgtgaaaacctgcaattttattaagatgtctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27582879|gb|CB005574.1|CB005574EST: CATGGCAAGCATTTGTTTTTGTACCAAAAGACAACTGGTATATTACAAAG ATTCCTCTTGCTCATTACCTACCAACATGGAGAGGAAATGTTATAGATGCA
genomic: CATGGCAAGCATTTGTTTTTGTACCAAAAGACAACTGGTATATTACAAAGgcaagttctg ... gtcttttcagATTCCTCTTGCTCATTACCTACCAACATGGAGAGGAAATGTTATAGATGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATATATACAGAGAATTGGGTGAATTCACCTGCACAACAGGAAGATAATTCATGGCAAGCATTTGTTTTTGTACCAAAAGACAACTGGTATATTACAAAGgcaagttctgtgctcctcaagctcatttgtgtaatgtgttgatataacagacctcactgtcatattggactatcatactactgtagcttacagatttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataacaga