1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAAGAGCAGTCGACAAGAGCTATCATTTGAAGATGAAAGCTTCTAGATTCATTTTCAGTGAGATTAGCCAAAAGTTTCCCATCATGCCATTTTCAGCAAGgtttatttctttcagaatattggttctcttggtgatcttttgccttgccctgtagtaacacttgtggggtttccttcatgatag
species | Vitis vinifera |
transcript | Vv08s0217g00020.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATTTTCAGTGAGATTAGCCAAAAGTTTCCCATCATGCCATTTTCAGCAAG GGCTTTGGAAGAGAAGCGGGCTCGACTGGGTTTAGTGGAATGTGTGAATCAEST: gi|46917947|gb|CN547276.1|CN547276
genomic: ATTTTCAGTGAGATTAGCCAAAAGTTTCCCATCATGCCATTTTCAGCAAGgtttatttct ... ttcatgatagGGCTTTGGAAGAGAAGCGGGCTCGACTGGGTCTAGTGGAATGTGTGAATCA
EST: ATTTTCAGTGAGATTAGCCAAAAGTTTCCCATCATGCCATTTTCAGCAAG GGCTTTGGAAGAGAAGCGGGCTCGACTGGGTCTAGTGGAATGTGTGAATCAEST: gi|37187910|gb|CF607261.1|CF607261
genomic: ATTTTCAGTGAGATTAGCCAAAAGTTTCCCATCATGCCATTTTCAGCAAGgtttatttct ... ttcatgatagGGCTTTGGAAGAGAAGCGGGCTCGACTGGGTCTAGTGGAATGTGTGAATCA
EST: ATTTTCAGTGAGATTAGCCAAAAGTTTCCCATCATGCCATTTTCAGCAAG GGCTTTGGAAGAGAAGCGGGCTCGACTGGGTCTAGTGGAATGTGTGAATCA
genomic: ATTTTCAGTGAGATTAGCCAAAAGTTTCCCATCATGCCATTTTCAGCAAGgtttatttct ... ttcatgatagGGCTTTGGAAGAGAAGCGGGCTCGACTGGGTCTAGTGGAATGTGTGAATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGAGCAGTCGACAAGAGCTATCATTTGAAGATGAAAGCTTCTAGATTCATTTTCAGTGAGATTAGCCAAAAGTTTCCCATCATGCCATTTTCAGCAAGgtttatttctttcagaatattggttctcttggtgatcttttgccttgccctgtagtaacacttgtggggtttccttcatgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG