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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACTCAATGATTGGTATGATCGAGAGATTGATGCAATTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaataatggctaattgcatgttatatatatgagagccaaaatcttgatttctgatgattaccttttaccttgtcttcatttatttattttgtgaaaatctcag

Basic information

species Vitis vinifera
transcript Vv08s0105g00590.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0105g00590.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os05g28200.1 (Oryza sativa), 5'ss of exon 6
ACACTCAATGATTGGTATGATCGAGAGATTGATGCAATTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaataatggctaattgcatgttatatatatgagagccaaaatcttgatttctgatgattaccttttaccttgtcttcatttatttattttgtgaaaatctcag
||| | || || |||||||||||||| || ||||| || ||||||||||| ||||||||||||||||| || ||||| ||||||||||||||  |     |||  || | |  | | | | ||         ||    | || || | | |  | |   |  |     ||  |   || | ||   |  |     
ACAATTAACGACTGGTATGATCGAGATATAGATGCGATAAATGAACCTTACCGTCCTATTCCTTCAGGCGCTATATCAGAAAATGAGgtatgccaatggagctttttcctttcttt-tctgtgctcatatttattcacagttttgtttagtttcatcagc--taatgacaaatgactactctgctgattt-----

upper sequence: Vv08s0105g00590.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G162672_T02 (Zea mays), 5'ss of exon 6
ACACTCAATGATTGGTATGATCGAGAGATTGATGCAATTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaataatggctaattgcatgttatatatatgagagccaaaatcttgatttctgatgat---taccttttaccttgtcttcatttatttattttgtgaaaatctcag-
||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| || ||||| ||||| |||||||||             || || | | | | ||| ||  |    |    || | |||| ||    |   ||    |  ||  |  ||   || |||||    |    || 
ACACTTAATGACTGGTATGATCGAGACATTGATGCAATTAATGAGCCTTATCGGCCTATTCCATCAGGTGCTATATCAGAAAACGAGgtatgt------------ctgtatttgagaaaaatgggaagcctttttggcatatgtgattatatgcatgcttagtttcatcaactattgactagtttgttggtactcgagt

upper sequence: Vv08s0105g00590.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G162672_T01 (Zea mays), 5'ss of exon 6
-------------ACACTCAATGATTGGTATGATCGAGAGATTGATGCAATTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaataatggctaattgcatgttatatatatgagagccaaaatcttgatttctgatgat---taccttttaccttgtcttcatttatttattttgtgaaaatctcag-
             ||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| || ||||| ||||| |||||||||             || || | | | | ||| ||  |    |    || | |||| ||    |   ||    |  ||  |  ||   || |||||    |    || 
TTCTTGCTTGTAGACACTTAATGACTGGTATGATCGAGACATTGATGCAATTAATGAGCCTTATCGGCCTATTCCATCAGGTGCTATATCAGAAAACGAGgtatgt------------ctgtatttgagaaaaatgggaagcctttttggcatatgtgattatatgcatgcttagtttcatcaactattgactagtttgttggtactcgagt

upper sequence: Vv08s0105g00590.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G18470.1 (Glycine max), 5'ss of exon 6
ACACTCAATGATTGGTATGATCGAGAGATTGATGCAATTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaataatggctaattgcatgttatatatatgagagccaaaatcttgatttctgatgattaccttttaccttgtcttcatttatttattttgtgaaaatctcag
|| || |||||||||||||| ||||| ||||| ||||| |||||||||||| | || |||||||| ||||||||||| || ||||||||||||  |||   || |      | |   | |   ||   | |  | |  |||| |  || ||  | |||  ||     || |  |                     
ACTCTGAATGATTGGTATGACCGAGAAATTGACGCAATAAATGAACCTTATAGACCAATTCCTTCTGGGGCAATATCTGAGAATGAGgtatgttgtaa-acctgagactgagatgccttttccagttgccatgtttc-atttttattgttttaccttttgctcaaaatcttgcag--------------------

upper sequence: Vv08s0105g00590.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G43310.1 (Glycine max), 5'ss of exon 6
ACACTCAATGATTGGTATGATCGAGAGATTGATGCAATTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaataatggctaattgcatgttatatatatgagagccaaaatcttgatttctgatgattaccttttaccttgtcttcatttatttattttgtgaaaatctcag--
||  | ||||||||||| || ||||| ||||||||||| |||||||||||| | || |||||||| ||||||||||| || |||||||||                      || || |  ||| | |  | || |   ||||   |    |  |||||   |   || |  |     |||  | |||||||     
ACTATGAATGATTGGTACGACCGAGAAATTGATGCAATAAATGAACCTTATAGACCAATTCCTTCTGGGGCAATATCTGAGAATGAGgta---------------------attgtaaacctgaaa-ctgagatgtct-tttccagttgccatgttttattattgttttacct-----tttgctaaaaatcttgaag

upper sequence: Vv08s0105g00590.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G19340.1 (Glycine max), 5'ss of exon 3
ACACTCAATGATTGGTATGATCGAGAGATTGATGCAATTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaataatggctaattgcatgttatatatatgagagccaaaatcttgatttctgatgattaccttttaccttgtcttcatttatttattttgtgaaaatctcag
|| || |||||||||||||| ||||| ||||| ||||| |||||||||||| |  | |||||||| ||||||||||| || ||||||||||||  |||   || |      | | | | |   ||   | |  | |  |||| |  || ||  | |||  ||     || |  |                     
ACTCTGAATGATTGGTATGACCGAGAAATTGACGCAATAAATGAACCTTATAGATCAATTCCTTCTGGGGCAATATCTGAGAATGAGgtatgttttaa-acctgagactgagatgtcttttctagttgccatgtttc-atttttattgttttaccttttgctcaaaatcttgcag--------------------

upper sequence: Vv08s0105g00590.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G51820.1 (Arabidopsis thaliana), 5'ss of exon 6
ACACTCAATGATTGGTATGATCGAGAGATTGATGCAATTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaataatggctaattgcatgttatatatatgagagccaaaatcttgatttctgatgattaccttttaccttgtcttcatttatttattttgtgaaaatctcag
||| |||| || ||||||||| |||| || || ||||||||||| || |||||||| ||||| || || |||||||| ||    ||||||  | |  |  |   ||||   | | |   |||          ||  ||||||||  | | | | |   |    |                               
ACAATCAACGACTGGTATGATAGAGATATCGACGCAATTAATGAGCCATATCGTCCAATTCCATCTGGAGCAATATCAGAGCCAGAGgtaactga-gacagaacattgtgagcttt---tatctcttttgtgattctgatttctccttactccttaaaatgcag-------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34547700|gb|CF515932.1|CF515932
EST:     TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAG                         GTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
genomic: TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaata ... aaaatctcagGTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
EST: gi|30252103|gb|CB968742.1|CB968742
EST:     TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAG                         GTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
genomic: TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaata ... aaaatctcagGTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
EST: gi|351018952|gb|FQ426451.1|FQ426451
EST:     TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAG                         GTTATTACTCACATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
genomic: TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaata ... aaaatctcagGTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
EST: gi|349830671|gb|FQ416969.1|FQ416969
EST:     TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAG                         GTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
genomic: TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaata ... aaaatctcagGTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
EST: gi|161716004|gb|FC065529.1|FC065529
EST:     TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAG                         GTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
genomic: TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaata ... aaaatctcagGTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
EST: gi|351033623|gb|FQ447782.1|FQ447782
EST:     TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAG                         GTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
genomic: TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaata ... aaaatctcagGTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
EST: gi|351041270|gb|FQ447397.1|FQ447397
EST:     TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAG                         GTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
genomic: TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaata ... aaaatctcagGTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
EST: gi|351034199|gb|FQ463133.1|FQ463133
EST:     TTAATGAACCTTATCGTCCTATTCCCTCAGGGGCAATATCCGAAAATGAG                         GTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
genomic: TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaata ... aaaatctcagGTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
EST: gi|351025946|gb|FQ427958.1|FQ427958
EST:     TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAG                         GTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
genomic: TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaata ... aaaatctcagGTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
EST: gi|351031189|gb|FQ445016.1|FQ445016
EST:     TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAG                         GTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
genomic: TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaata ... aaaatctcagGTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
EST: gi|352791138|gb|FQ477465.1|FQ477465
EST:     TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAG                         GTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
genomic: TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaata ... aaaatctcagGTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
EST: gi|351028530|gb|FQ444811.1|FQ444811
EST:     TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAG                         GTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
genomic: TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaata ... aaaatctcagGTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
EST: gi|349833147|gb|FQ416525.1|FQ416525
EST:     TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAACATGAG                         GTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
genomic: TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaata ... aaaatctcagGTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
EST: gi|351014975|gb|FQ444264.1|FQ444264
EST:     TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAG                         GTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
genomic: TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaata ... aaaatctcagGTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
EST: gi|351017844|gb|FQ436197.1|FQ436197
EST:     TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAG                         GTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
genomic: TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaata ... aaaatctcagGTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
EST: gi|110712697|gb|EE087971.1|EE087971
EST:     TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAG                         GTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
genomic: TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaata ... aaaatctcagGTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
EST: gi|110698374|gb|EE075807.1|EE075807
EST:     TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAG                         GTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
genomic: TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaata ... aaaatctcagGTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
EST: gi|161709250|gb|FC060129.1|FC060129
EST:     TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAG                         GTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
genomic: TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaata ... aaaatctcagGTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
EST: gi|351018561|gb|FQ424668.1|FQ424668
EST:     TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAG                         GTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
genomic: TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaata ... aaaatctcagGTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
EST: gi|349829107|gb|FQ419639.1|FQ419639
EST:     TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAG                         GTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT
genomic: TTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaata ... aaaatctcagGTTATTACTCAAATCTGGTTGCTTCTGCTTGGAGGTCTTGGCTTGGCTGGT