Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAACAACCTTTTTTACTGATCTGCATCACATACTTAGAGTAATAGCAGCTGGGAATATTCGAACCTTATGTCACCATCGGTTGGTTCTTCTCGAACAGgtagatgctacttttctgtatttgattcacatatttgaattttttttttttgatttgtcatttattgaaatgtatgctctttttctttttcttttttctttttttacctctttttgtaaatgacaatctggtggttgttttggttaccaatcag

Basic information

species Vitis vinifera
transcript Vv08s0105g00570.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0105g00570.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA03G07460.1 (Glycine max), 5'ss of exon 6
TGCAACAACCTTTTTTACTGATCTGCATCACATACTTAGAGTAATAGCAGCTGGGAATATTCGAACCTTATGTCACCATCGGTTGGTTCTTCTCGAACAGgtagatgct-acttttctgtatttgattcacatatttgaattttttttttttgatttgtcatttattgaaatgtat-gctctttttctttttcttttttctttttttacctctttttgtaaatgacaatctggtggttgttttggttaccaatcag
|||||| || ||||| |||||||| |||||||||||| |||| |||||||| ||||||||  |||| ||||| || ||| |  |   |||||| ||||| ||| ||    | ||| ||| || ||| | ||| | |  |   | |  || |   ||  | |  ||    |||  || | | |||  |  ||||| | || |||                                                     
TGCAACTACATTTTTCACTGATCTTCATCACATACTTCGAGTCATAGCAGCAGGGAATATAAGAACTTTATGCCATCATAGACTCAATCTTCTAGAACAAgtacatatcgaatttactgaatatgagtaacaaactgcagcctatgcttgtattttaattacgtacaagaatcaattgttgtttgacaatttctgtattttttcag--------------------------------------------------