Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAGGCCTGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattctataacttattcttttcttggcttttgctcttctgatgctaaaattccatgtcgcttttatgcggttgaaagttcttacctgttatgtag...

Basic information

species Vitis vinifera
transcript Vv08s0105g00280.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351034903|gb|FQ458260.1|FQ458260
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
EST: gi|37189315|gb|CF608664.1|CF608664
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTT
EST: gi|110388463|gb|EC953218.1|EC953218
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTTGTGGGACCAGCTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
EST: gi|351034907|gb|FQ458264.1|FQ458264
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
EST: gi|110689931|gb|EE066589.1|EE066589
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTTGTGGGACCAGCTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
EST: gi|349827619|gb|FQ422487.1|FQ422487
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTTGTGGGACCAGCTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
EST: gi|351012282|gb|FQ429967.1|FQ429967
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
EST: gi|351053282|gb|FQ459150.1|FQ459150
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
EST: gi|110691373|gb|EE069403.1|EE069403
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTTGTGGGACCAGCTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
EST: gi|351025564|gb|FQ426380.1|FQ426380
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
EST: gi|71875347|gb|DT024402.1|DT024402
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTTGTGGGACCAGCTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
EST: gi|110686904|gb|EE063847.1|EE063847
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTTGTGGGACCAGCTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
EST: gi|351035636|gb|FQ463481.1|FQ463481
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
EST: gi|349827505|gb|FQ422373.1|FQ422373
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
EST: gi|351056948|gb|FQ443575.1|FQ443575
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
EST: gi|351032431|gb|FQ458796.1|FQ458796
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTTGTGGGACCAGCTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
EST: gi|351049548|gb|FQ429170.1|FQ429170
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTTGTGGGACCAGCTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
EST: gi|349830525|gb|FQ416835.1|FQ416835
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
EST: gi|77588634|gb|DV223535.1|DV223535
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTTGTGGGACCAGCTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
EST: gi|351049014|gb|FQ431558.1|FQ431558
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTTGTGGGACCAGCTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
EST: gi|351056833|gb|FQ443460.1|FQ443460
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
EST: gi|71875464|gb|DT024519.1|DT024519
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTTGTGGGACCAGCTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
EST: gi|110701282|gb|EE078674.1|EE078674
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTTGTGGGACCAGCTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT
EST: gi|161720669|gb|FC070613.1|FC070613
EST:     TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAA                         CCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTTGTGGGACCAGCTT
genomic: TGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattc ... tcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCAGGCCTGTTGCCGAAGATGAAATGTTTAAAGTTCTTAGGACTGGTAAAAGGAAAAgtaagtattctataacttattcttttcttggcttttgctcttctgatgctaaaattccatgtcgcttttatgcggttgaaagttcttacctgttatgtag

- - - - - - - CGAAGA
- - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctaaaa