1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATGGAGAGGATGCACATGAAGTTCAGACTGCCGCTAAAAGGTTGCATCTGAATCTCAATTTTATGAAAGGGAGAGACCATGCAGATGATTCACTTCATGGgtaaggatccttaaggagcccaattcaccgtgttttttttttttcctgaaaattattccctgaaaagaaaatagtattttgaacaagtttcaattgatca...
species | Vitis vinifera |
transcript | Vv08s0105g00260.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AATCTCAATTTTATGAAAGGGAGAGACCATGCAGATGATTCACTTCATGG TTACAAAGTCTTCATAAATCCCAGTGTCAGTGATGTGCTCTGCACAGCTACEST: gi|30300948|gb|CB977742.1|CB977742
genomic: AATCTCAATTTTATGAAAGGGAGAGACCATGCAGATGATTCACTTCATGGgtaaggatcc ... ttccttgcagTTACAAAGTCTTCATAAATCCCAGTGTCAGTGATGTGCTCTGCACAGCTAC
EST: AATCTCAATTTTATGAAAGGGAGAGACCATGCAGATGATTCACTTCATGG TTACAAAGTCTTCATAAATCCCAGTGTCAGTGATGTGCTCTGCACAGCTACEST: gi|219555089|gb|FG984878.1|FG984878
genomic: AATCTCAATTTTATGAAAGGGAGAGACCATGCAGATGATTCACTTCATGGgtaaggatcc ... ttccttgcagTTACAAAGTCTTCATAAATCCCAGTGTCAGTGATGTGCTCTGCACAGCTAC
EST: AATCTCAATTTTATGAAAGGGAGAGACCATGCAGATGATTCACTTCATGG TTACAAAGTCTTCATAAATCCCAGTGTCAGTGATGTGTTCTGCACAGCTACEST: gi|30300881|gb|CB977675.1|CB977675
genomic: AATCTCAATTTTATGAAAGGGAGAGACCATGCAGATGATTCACTTCATGGgtaaggatcc ... ttccttgcagTTACAAAGTCTTCATAAATCCCAGTGTCAGTGATGTGCTCTGCACAGCTAC
EST: AATCTCAATTTTATGAAAGGGAGAGACCATGCAGATGATTCACTTCATGG TTACAAAGTCTTCATAAATCCCAGTGTCAGTGATGTGCTCTGCACAGCTACEST: gi|110725725|gb|EE102558.1|EE102558
genomic: AATCTCAATTTTATGAAAGGGAGAGACCATGCAGATGATTCACTTCATGGgtaaggatcc ... ttccttgcagTTACAAAGTCTTCATAAATCCCAGTGTCAGTGATGTGCTCTGCACAGCTAC
EST: AATCTCAATTTTATGGAAGGGAGAGACCATGCAGATGATTCACTTCATGG TTACAAAGTCTTCATAAATCCCAGTGTCAGTGATGTGCTCTGCACAGCTACEST: gi|219555408|gb|FG985021.1|FG985021
genomic: AATCTCAATTTTATGAAAGGGAGAGACCATGCAGATGATTCACTTCATGGgtaaggatcc ... ttccttgcagTTACAAAGTCTTCATAAATCCCAGTGTCAGTGATGTGCTCTGCACAGCTAC
EST: AATCTCAATTTTATGAAAGGGAGAGACCATGCAGATGATTCACTTCATGG TTACAAAGTCTTCATAAATCCCAGTGTCAGTGATGTGTTCTGCACAGCTACEST: gi|110695961|gb|EE074578.1|EE074578
genomic: AATCTCAATTTTATGAAAGGGAGAGACCATGCAGATGATTCACTTCATGGgtaaggatcc ... ttccttgcagTTACAAAGTCTTCATAAATCCCAGTGTCAGTGATGTGCTCTGCACAGCTAC
EST: AATCTCAATTTTATGAAAGGGAGAGACCATGCAGATGATTCACTTCATGG TTACAAAGTCTTCATAAATCCCAGTGTCAGTGATGTGCTCTGCACAGCTAC
genomic: AATCTCAATTTTATGAAAGGGAGAGACCATGCAGATGATTCACTTCATGGgtaaggatcc ... ttccttgcagTTACAAAGTCTTCATAAATCCCAGTGTCAGTGATGTGCTCTGCACAGCTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGAGAGGATGCACATGAAGTTCAGACTGCCGCTAAAAGGTTGCATCTGAATCTCAATTTTATGAAAGGGAGAGACCATGCAGATGATTCACTTCATGGgtaaggatccttaaggagcccaattcaccgtgttttttttttttcctgaaaattattccctgaaaagaaaatagtattttgaacaagtttcaattgatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaag