Sequence
atgc intronic sequence ATGC exonic sequenceGATGGATATTCATTACTCATGTTGCAGTATGGGGATCAATTATCATTACATATGCTTGTCTGATTGCAGTGGATTCTATACCTATCTTCCCCAATTACGGgttagtctcctcccttatagtcattaattttttacgctacactttttatgatttatcttcattttttcaggtttataatgtaactccaatattttctatgtttggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0058g01400.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G44550.1 (Glycine max), 5'ss of exon 9
GATGGATATTCATTACTCATGTTGCAGTATGGGGATCAATTATCATTACATATGCTTGTCTGATTGCAGTGGATTCTATACCTATCTTCCCCAATTACGGgttagtc-tcctcccttatagtcattaattttttacgctacactttttatgatttatcttcattttttcaggtttataatgtaactccaatattttctatgtttggcag
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GTTGGGTATTAATTACTCATGTTGCTATCTGGGGATCAATAATCATTACATATGGTTGCATGGTGGTATTGGATTCTATACCTGTCTTTCCCAATTACTGgttagttattgtgtccttcaataagtattctgtaatg-tgtattgtggatgaag-------------------------------------------------------
upper sequence: Vv08s0058g01400.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA09G41040.1 (Glycine max), 5'ss of exon 10
GATGGATATTCATTACTCATGTTGCAGTATGGGGATCAATTATCATTACATATGCTTGTCTGATTGCAGTGGATTCTATACCTATCTTCCCCAATTACGGgttagtctcctcc--cttatagtcattaattttttacgctacactttttatgatttatcttcattttttcaggtttataatgtaact--ccaatattttctatgtttggcag
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GTTGGGTATTAATTACTCATGTTGCTATCTGGGGATCAATAATCATTACATATGGTTGCATGGTGGTACTGGATTCTATACCTGTGTTTCCCAATTACTGgttagttacatgtggccttcaataagta-ttctgtaatctgtattatggatgaagca-----gtactgtagggtataatatacagctaacctgtccctcaaaatcattgcag
upper sequence: Vv08s0058g01400.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G34610.1 (Glycine max), 5'ss of exon 6
GATGGATATTCATTACTCATGTTGCAGTATGGGGATCAATTATCATTACATATGCTTGTCTGATTGCAGTGGATTCTATACCTATCTTCCCCAATTACGGgttagtctcctcccttatagtcattaattttttacgctacactttttatgatttatcttcattttttcaggtttata----atgtaactccaatattttctatgtttggcag
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AATGGGCACTAGTTAGTCATGTTGCTGTTTGGGGATCTATAATCATTACATATGGTTGCATGGTGATATTGGATTCTATACCTGTCTTTCCGAATTACGGgttagtcatgt--------gtgatgtgtgtcttcctatgaatatattgtattgtagattagtagtgtaggatatatagcttatgtgcctctaatcatttcag----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122688979|gb|EC928082.1|EC928082EST: TATGCTTGTCTGATTGCAGTGGATTCTATACCTATCTTCCCCAATTACGG GACAATTTATCATCTGGCAAAGTCACCTTCCTATTGGCTGTCTATTTTTCT
genomic: TATGCTTGTCTGATTGCAGTGGATTCTATACCTATCTTCCCCAATTACGGgttagtctcc ... tgtttggcagGACAATTTATCATCTGGCAAAGTCACCTTCCTATTGGCTGTCTATTTTTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGGATATTCATTACTCATGTTGCAGTATGGGGATCAATTATCATTACATATGCTTGTCTGATTGCAGTGGATTCTATACCTATCTTCCCCAATTACGGgttagtctcctcccttatagtcattaattttttacgctacactttttatgatttatcttcattttttcaggtttataatgtaactccaatattttctatgtttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA