1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGGTAGAGACAAATGAGTGTTTGGAAAATAATGGTGGATGCTGGCAGGATAAGGCTGCTAATATTACTGCATGCAAGgtacttttatgtcttttgcctgtttcctgttatgcgttctctgcatgtcttcgtttgggattcaatggttctctgttatggtgttcttctgatcaaataattttgttatag
species | Vitis vinifera |
transcript | Vv08s0058g01360.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATAATGGTGGATGCTGGCAGGATAAGGCTGCTAATATTACTGCATGCAAG GATACATTTCGGGGCAGAGTGTGTGAATGTCCTATCGTGCAAGGTGTCAAGEST: gi|29781753|gb|CB346482.2|CB346482
genomic: ATAATGGTGGATGCTGGCAGGATAAGGCTGCTAATATTACTGCATGCAAGgtacttttat ... tttgttatagGATACATTTCGGGGCAGAGTGTGTGAATGTCCTATTGTGCAAGGCGTCAAG
EST: ATAATGGTGGATGCTGGCAGGATAAGGCTGCTAATATTACTGCATGCAAG GATACATTTCGGGGCAGAGTGTGTGAATGTCCTATCGTGCAAGGCGTCAAGEST: gi|110390350|gb|EC955254.1|EC955254
genomic: ATAATGGTGGATGCTGGCAGGATAAGGCTGCTAATATTACTGCATGCAAGgtacttttat ... tttgttatagGATACATTTCGGGGCAGAGTGTGTGAATGTCCTATTGTGCAAGGCGTCAAG
EST: GCTAATATTACTGCATGCAAG GATACATTTCGGGGCAGAGTGTGTGAATGTCCTATCGTGCAAGGCGTCAAG
genomic: GCTAATATTACTGCATGCAAGgtacttttat ... tttgttatagGATACATTTCGGGGCAGAGTGTGTGAATGTCCTATTGTGCAAGGCGTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTAGAGACAAATGAGTGTTTGGAAAATAATGGTGGATGCTGGCAGGATAAGGCTGCTAATATTACTGCATGCAAGgtacttttatgtcttttgcctgtttcctgttatgcgttctctgcatgtcttcgtttgggattcaatggttctctgttatggtgttcttctgatcaaataattttgttatag
- - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT