Sequence
atgc intronic sequence ATGC exonic sequenceCTCAAATTCCACCATCGTACCATTATTTGAAAAGATGCTAAGTGCCAGTGATGCTGGTCGTATTGGTCGTTTAGTGCTCCCAAAAGCATGTGCTGAAgtaagctttccattgtgtgcttagtctggctttcatttgacaaaataatatttattggttgtcttttgcatttttcattttttttcgttcttcccaaatttaactgttaagcttatttttgttgaaccttatctgtatatcaattgaaactaaaccattttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G32810.1 (Glycine max), 5'ss of exon 10
CTCAAATTCCACCATCGTACCATTATTTGAAAAGATGCTAAGTGCCAGTGATGCTGGTCGTATTGGTCGTTTAGTGCTCCCAAAAGCATGTGCTGAAgtaagctttccattgtgtgcttagtctggctttcatttgacaaaataatatttattggttgtcttttgcatttttcattttttttcgttcttcccaaatttaactgttaagcttatttttgttgaaccttatc-tgtatatcaattgaaac--taaaccattttgcag
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TTCAAATTCTACAATCGTGCCACTCTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTTTACCAAAAGCATGTGCTGAAgtaatttatc----------ttaac-------tcatctgttgaactggcatttactg-ttgtc------attttatattaactaacaattctagtaaa---agttgttt------ttcttgatgagtctggtaatttgttaaaactgaaagaggagaccattgtgcag
upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA03G04330.1 (Glycine max), 5'ss of exon 7
CTCAAATTCCACCATCGTACCATTATTTGAAAAGATGCTAAGTGCCAGTGATGCTGGTCGTATTGGTCGTTTAGTGCTCCCAAAAGCATGTGCTGAAgtaagctttccattgtgtgcttagtctggctttcatttgacaaaataatatttattggttgtcttttgcatttttcattttttttcgttcttcccaaatttaactgttaagcttatttttgttgaaccttatc-tgtatatcaattgaa--actaaaccattttgcag
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TTCAAATTCTACGATTGTGCCACTCTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTTTACCAAAAGCATGTGCTGAAgtaa---------------tttatcctaact--catctgttgaactggcctttactg-ttgtc------attttatattaactaacaattctagtaaaa------gtta---tttttcttgacgagtctggtaatttgttaaaactgaaagacgagagcattgtgcag
upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: PP1S31_242V6.1 (Physcomitrella patens), 5'ss of exon 6
CTCAAATTCCACCATCGTACCATTATTTGAAAAGATGCTAAGTGCCAGTGATGCTGGTCGTATTGGTCGTTTAGTGCTCCCAAAAGCATGTGCTGAAgtaagctttccattgtgtgcttagtctggctttcatttgacaaaataatatttattggttgtcttttgcatttttcattttttttcgttcttcccaaatttaactgttaagcttatttttgttgaaccttatctgtatatcaattgaaactaaaccattttgcag
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CACACAAACTACCATCACTCCTCTGTTCGAGAAAATGCTGAGTGCCAGTGATGCCGGTCGGATTGGTCGTTTGGTGCTTCCAAAAGCATGCGCCGAGgtatgcatgtggaagtgtg-ttagtgtgagtgtgagtgt---gagtatgagtgaatg--tgtgctttgttctggtaactttgtgaagaa------gaatgaagaagacatgt-----------------------------------------------------
upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: PP1S42_132V6.1 (Physcomitrella patens), 5'ss of exon 7
CTCAAATTCCACCATCGTACCATTATTTGAAAAGATGCTAAGTGCCAGTGATGCTGGTCGTATTGGTCGTTTAGTGCTCCCAAAAGCATGTGCTGAAgtaagctttccattgtgtgcttagtctggctttcatttgacaaaataatatttattggttgtcttttgcatttttcattttttttcgttcttcccaaatttaactgttaagcttatttttgttgaaccttatctgtatatcaattgaaactaaaccattttgcag
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TATGCAAACCACCATCACTCCCTTGTTCGAGAAAATGCTGAGTGCCAGCGATGCTGGTCGGATTGGTCGTTTGGTGCTTCCAAAAGCATGTGCTGAGgtaggc------------acggagtttatcttt---ttaattacctaagaagtgcaatgtgcgctttatattgatagttttcttatgtt-taagaaaaggaaggcgtt---cttgtacc----------------------------------------------
upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: EFJ17236 (Selaginella moellendorffii), 5'ss of exon 5
CTCAAATTCCACCATCGTACCATTATTTGAAAAGATGCTAAGTGCCAGTGATGCTGGTCGTATTGGTCGTTTAGTGCTCCCAAAAGCATGTGCTGAAgtaagctttccattgtgtgcttagtctggctttcatttgacaaaataatatttattggttgtcttttgcatttttcattttttttcgttcttcccaaatttaactgttaagcttatttttgttgaaccttatctgtatatcaattgaaactaaaccattttgcag
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------CTCTAAAATTACACCCCTGTTCGAGAAAGTACTCAGTGCCAGTGACGCTGGACGTATTGGACGATTGGTTCTTCCAAAAGCATGTGCGGAGgtctgcatgttcttttgtccttttcattggcactgtgcgactgtgttttgat-gcag------------------------------------------------------------------------------------------------------------
upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: EFJ30938 (Selaginella moellendorffii), 5'ss of exon 5
CTCAAATTCCACCATCGTACCATTATTTGAAAAGATGCTAAGTGCCAGTGATGCTGGTCGTATTGGTCGTTTAGTGCTCCCAAAAGCATGTGCTGAAgtaagctttccattgtgtgcttagtctggctttcatttgacaaaataatatttattggttgtcttttgcatttttcattttttttcgttcttcccaaatttaactgttaagcttatttttgttgaaccttatctgtatatcaattgaaactaaaccattttgcag
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------CTCTAAAATTACACCCCTGTTCGAGAAAGTACTCAGTGCCAGTGACGCTGGACGTATTGGACGATTGGTTCTTCCAAAAGCATGTGCGGAGgtctgcatgttcttttgtccttttcattggcattgtgcgactgtgttttgat-gcag------------------------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|46917866|gb|CN547195.1|CN547195EST: GTGATGCTGGTCGTATTGGTCGTTTAGTGCTCCCAAAAGCATGTGCTGAA GCATATTTTCCTCCTATCTCTCAACCAGAGGGCCTTCCTTTAAGGATTCAG
genomic: GTGATGCTGGTCGTATTGGTCGTTTAGTGCTCCCAAAAGCATGTGCTGAAgtaagctttc ... cattttgcagGCATATTTTCCTCCTATCTCTCAACCAGAGGGCCTTCCTTTAAGGATTCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCAAATTCCACCATCGTACCATTATTTGAAAAGATGCTAAGTGCCAGTGATGCTGGTCGTATTGGTCGTTTAGTGCTCCCAAAAGCATGTGCTGAAgtaagctttccattgtgtgcttagtctggctttcatttgacaaaataatatttattggttgtcttttgcatttttcattttttttcgttcttcccaaatttaactgttaagcttatttttgttgaaccttatctgtatatcaattgaaactaaaccattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG