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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTGAAAGTAATCGAGAAAGAAAAGCTTCAGGAGAACGCATATGTTGTTGGGTCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAAgtaagggtgaatttttcctcccccttgtgcagtatgtatcttctctctactgtcccttgtaattttttctgacgatggctgagtgtattgtaatcctgtctgcag

Basic information

species Vitis vinifera
transcript Vv08s0058g00930.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33407899|gb|CF213526.1|CF213526
EST:     TGGATCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAA                         TTATTGGAGATGTGAGGGGAAGAGGGCTGATGCTTGGAGTTGAATTCGTCA
genomic: TGGGTCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAAgtaagggtga ... ctgtctgcagTTATTGGAGATGTGAGGGGAAGAGGGCTGATGCTTGGAGTTGAATTCGTCA
EST: gi|46918783|gb|CN548112.1|CN548112
EST:     TGGATCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAA                         TTATTGGAGATGTGAGGGGAAGAGGGCTGATGCTTGGAGTTGAATTCGTCA
genomic: TGGGTCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAAgtaagggtga ... ctgtctgcagTTATTGGAGATGTGAGGGGAAGAGGGCTGATGCTTGGAGTTGAATTCGTCA
EST: gi|30125870|gb|CB911209.1|CB911209
EST:     TGGGTCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAA                         TTATTGGAGATGTGAGGGGAAGAGGGCTGATGCTTGGAGTTGAATTCGTCA
genomic: TGGGTCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAAgtaagggtga ... ctgtctgcagTTATTGGAGATGTGAGGGGAAGAGGGCTGATGCTTGGAGTTGAATTCGTCA
EST: gi|110362761|gb|EC926313.1|EC926313
EST:     TGGATCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAA                         TTATTGGAGATGTGAGGGGAAGAGGTCTGATGCTTGGAGTTGAATTCGTCA
genomic: TGGGTCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAAgtaagggtga ... ctgtctgcagTTATTGGAGATGTGAGGGGAAGAGGGCTGATGCTTGGAGTTGAATTCGTCA
EST: gi|71882027|gb|DT031082.1|DT031082
EST:     TGGATCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAA                         TTATTGGAGATGTGAGGGGAAGAGGGCTGATGCTTGGAGTTGAATTCGTCA
genomic: TGGGTCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAAgtaagggtga ... ctgtctgcagTTATTGGAGATGTGAGGGGAAGAGGGCTGATGCTTGGAGTTGAATTCGTCA
EST: gi|352795137|gb|FQ477247.1|FQ477247
EST:     TGGGTCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAA                         TTATTGGAGATGTGAGGGGAAGAGGGCTGATGCTTGGAGTTGAATTCGTCA
genomic: TGGGTCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAAgtaagggtga ... ctgtctgcagTTATTGGAGATGTGAGGGGAAGAGGGCTGATGCTTGGAGTTGAATTCGTCA
EST: gi|110390213|gb|EC955113.1|EC955113
EST:     TGGATCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAA                         TTATTGGAGATGTGAGGGGAAGAGGGCTGATGCTTGGAGTTGAATTCGTCA
genomic: TGGGTCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAAgtaagggtga ... ctgtctgcagTTATTGGAGATGTGAGGGGAAGAGGGCTGATGCTTGGAGTTGAATTCGTCA
EST: gi|33407479|gb|CF213106.1|CF213106
EST:     TGGATCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAA                         TTATTGGAGATGTGAGGGGAAGAGGGCTGATGCTTGGAGTTGAATTCGTCA
genomic: TGGGTCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAAgtaagggtga ... ctgtctgcagTTATTGGAGATGTGAGGGGAAGAGGGCTGATGCTTGGAGTTGAATTCGTCA
EST: gi|71885356|gb|DT034411.1|DT034411
EST:     TGGATCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAA                         TTATTGGAGATGTGAGGGGAAGAGGGCTGATGCTTGGAGTTGAATTCGTCA
genomic: TGGGTCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAAgtaagggtga ... ctgtctgcagTTATTGGAGATGTGAGGGGAAGAGGGCTGATGCTTGGAGTTGAATTCGTCA
EST: gi|32458063|gb|CD799237.1|CD799237
EST:     TGGATCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAA                         TTATTGGAGATGTGAGGGGAAGAGGGCTGATGCTTGGAGTTGAATTCGTCA
genomic: TGGGTCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAAgtaagggtga ... ctgtctgcagTTATTGGAGATGTGAGGGGAAGAGGGCTGATGCTTGGAGTTGAATTCGTCA
EST: gi|110380642|gb|EC945925.1|EC945925
EST:     TGGATCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAA                         TTATTGGAGATGTGAGGGGAAGAGGGCTGATGCTTGGAGTTGAATTCGTCA
genomic: TGGGTCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAAgtaagggtga ... ctgtctgcagTTATTGGAGATGTGAGGGGAAGAGGGCTGATGCTTGGAGTTGAATTCGTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCTGAAAGTAATCGAGAAAGAAAAGCTTCAGGAGAACGCATATGTTGTTGGGTCATACTTGAAGGAGCGGCTCCTTTCCCTCAAGGACAAATATGAAAgtaagggtgaatttttcctcccccttgtgcagtatgtatcttctctctactgtcccttgtaattttttctgacgatggctgagtgtattgtaatcctgtctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG