Sequence
atgc intronic sequence ATGC exonic sequenceCTCCCACACATGTACTGCTGGGGCATTTGGCCAGTTTGCTACTGGAATAGGTAACACCGATGCTGGTTTTGTATTGGGCACTGGAAAGATCCTGCTCAAGgttactgaatcctcttttgtctccttaatgttttagttatgtttttcccctcaatttgagtttctgtgtggatgttgtaactcatagatatcttggtttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0056g01640.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os02g03260.1 (Oryza sativa), 5'ss of exon 5
CTCCCACACATGTACTGCTGGGGCATTTGGCCAGTTTGCTACTGGAATAGGTAACACCGATGCTGGTTTTGTATTGGGCACTGGAAAGATCCTGCTCAAGgttactgaatcctcttttgtctccttaatgttttagttatgtttttcccctcaatttgagtttctgtgtggatgttgtaactcatagatatcttggtttt--
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TTCTCATACATGCAATGCTGGAGCCTTTGGCCAATTTGCAACTGGAATTGGAAACACTGATGCTGGTTTTGTGATGGGCACTGGGAAGGCTCTTCTTAAGgtatgtagaaagt--tctgattactccgtatcgaattcaaatatcagccttgatagtaaaaagtggttcagatattggttagtgagttcatctgaatgatgt
upper sequence: Vv08s0056g01640.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G010044_T02 (Zea mays), 5'ss of exon 5
CTCCCACACATGTACTGCTGGGGCATTTGGCCAGTTTGCTACTGGAATAGGTAACACCGATGCTGGTTTTGTATTGGGCACTGGAAAGATCCTGCTCAAGgttactgaatcctcttttgtctccttaatgttttagttatgtttttcccctcaatttgagtttctgtgtggatgttgtaactcatag-atatcttggtttt
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TTCTCATACATGCAATGCTGGAGCTTTTGGTCAGTTTGCAACTGGAATCGGAAACACTGATGCAGGTTTTGTGTTGGGCACTGGAAAGGCTCTTCTCAAGgtatgcccatggttcttgttgttctaagaagataaattttgaaaaccagtcttacagaaccaaaaaaggaagagaaaagggtcagggtatatgcaaactg-
upper sequence: Vv08s0056g01640.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G370852_T02 (Zea mays), 5'ss of exon 5
-----CTCCCACACATGTACTGCTGGGGCATTTGGCCAGTTTGCTACTGGAATAGGTAACACCGATGCTGGTTTTGTATTGGGCACTGGAAAGATCCTGCTCAAGgttactgaatcctcttttgtctccttaatgttt--tagttatgtttttcccctcaatttga--gtttctgtgtggatgttgtaactcatagatatcttggtttt
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ACTGATTCTCATACGTGCAATGCTGGAGCCTTTGGTCAATTTGCAACCGGAATTGGAAACACTGATGCAGGTTTTGTGATGGGCACTGGAAAGGCTCTTCtcaaggtacgcccatggttgttggttgttgttactctcggaaggcaaaattttaaaaccagtcttatagggcatacccaatggtagaggctcccacatga---------
upper sequence: Vv08s0056g01640.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G370852_T01 (Zea mays), 5'ss of exon 5
CTCCCACACATGTACTGCTGGGGCATTTGGCCAGTTTGCTACTGGAATAGGTAACACCGATGCTGGTTTTGTATTGGGCACTGGAAAGATCCTGCTCAAGgttactgaatcctcttttgtctccttaatgtttt--agttatgtttttcccctcaatttg--agtttctgtgtggatgttgtaactcatagatatcttggtttt
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TTCTCATACGTGCAATGCTGGAGCCTTTGGTCAATTTGCAACCGGAATTGGAAACACTGATGCAGGTTTTGTGATGGGCACTGGAAAGGCTCTTCTCAAGgtacgcccatggttgttggttgttgttactctcggaaggcaaaattttaaaaccagtcttatagggcatacccaatggtagaggctcccacatgaatgag----
upper sequence: Vv08s0056g01640.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G37540.1 (Glycine max), 5'ss of exon 6
-CTCCCACACATGTACTGCTGGGGCATTTGGCCAGTTTGCTACTGGAATAGGTAACACCGATGCTGGTTTTGTATTGGGCACTGGAAAGATCCTGCTCAAGgt------tactgaatcctcttttgtctccttaatgttttagttatgtttttcccctcaatttgagtttctgtgtggatgttgtaactcatagatatcttggtttt
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ATTCTCACACTTGTACTGCTGGAGCATTTGGCCAATTTGCTACAGGGATTGGTAATACTGATGCTGGCTTTGTGCTGGGAACTGGGAAACTTCTGCTTAAggtagtttctgctaaaggcccattc-taacttgagggttccttccagaaaccagccatagat---accctcagtagatagggagagaaggagagaaacctctct---
upper sequence: Vv08s0056g01640.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA14G40570.1 (Glycine max), 5'ss of exon 6
CTCCCACACATGTACTGCTGGGGCATTTGGCCAGTTTGCTACTGGAATAGGTAACACCGATGCTGGTTTTGTATTGGGCACTGGAAAGATCCTGCTCAAGgttactg--aatcctcttttgtctc--cttaatgttttagttatgtttttcccctcaatttgag-tttctgtgtggatgttgtaactcatagatatcttggtttt
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TTCTCACACTTGTACTGCTGGAGCATTTGGTCAATTTGCTACAGGGATTGGTAATACTGATGCCGGCTTTGTGCTGGGAACTGGGAAACTTCTGCTCAAGgtagtttctgctcaagatccattctaacttgataccctcagaagatagggagagaaggagagagacctctctttaattgttgggg-tcgctgatcttactg----
upper sequence: Vv08s0056g01640.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT4G13430.1 (Arabidopsis thaliana), 5'ss of exon 6
CTCCCACACATGTACTGCTGGGGCATTTGGCCAGTTTGCTACTGGAATAGGTAACACCGATGCTGGTTTTGTATTGGGCACTGGAAAGATCCTGCTCAAGgttactgaatc------ctcttttgtctccttaatgttttagttatgtttttcccctcaatttgagtttctgtgtggatgttgtaactcatagatatcttggtttt------------------------------------------------------------
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CTCACACACTTGTACTGCTGGAGCATTTGGTCAATTTGCTACAGGGATTGGAAACACTGATGCAGGTTTTGTGTTAGGCACTGGAAAAATCCTCCTTAAGgtttgtagaatagctgattcctttgattctcta-tgatatagttttattcagtgtgttaaatggaaatcagtgatgcctgtttcaacttgaaaaaggcttgttagaatagtttccccctctccaaattatactgtagtgtctgaagctcatatcctgacttcgcag
upper sequence: Vv08s0056g01640.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: EFJ16664 (Selaginella moellendorffii), 5'ss of exon 3
CTCCCACACATGTACTGCTGGGGCATTTGGCCAGTTTGCTACTGGAATAGGTAACACCGATGCTGGTTTTGTATTGGGCACTGGAAAGATCCTGCTCAAGgttactgaatcctcttttgtctccttaatgttttagttatgttt---ttcccctcaatttgagtttctgtgtggatgttgtaactcatagatatct--tggtttt-------------------------------------------------------------------------------
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----CATACTTGCACTGCTGGAGCGTCTGGACAATTCGCTACTGGAATAGGAAACACCGATGCTGGTTTCATCATGGGAACTGGAATTTTTTTACTAAAGGCAAgtaggcgct-tttggcatctttgtttcttcttacaagcttaggtgcccggaacattgagatttgttcttgatggagaaatgccgtcatatttgctggccaaggatttgatactgcaggtgtgtttggatttttagcgagagctggctccctgtacttgaagtacttatatgcacgttgag
upper sequence: Vv08s0056g01640.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: EFJ16666 (Selaginella moellendorffii), 5'ss of exon 5
CTCCCACACATGTACTGCTGGGGCATTTGGCCAGTTTGCTACTGGAATAGGTAACACCGATGCTGGTTTTGTATTGGGCACTGGAAAGATCCTGCTCAAGgttactgaatcctcttttgtctccttaatgttttagttatgtttttcccctcaatttgagtttctgtgtggatgttgtaactcatagatatcttggtttt
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CTCGCATACTTGCACCGCTGGAGCGTTTGGACAATTCGCTACTGGAATAGGAAACACCGATGCTGGTTTCATCATGGGAACTGGAAAAATTTTACTAAAGgcaagtaggcgct-ttttgcatctttgtttcttc--ttacaagcttcgctactgtctag-----------------------------------------
upper sequence: Vv08s0056g01640.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: EFJ32611 (Selaginella moellendorffii), 5'ss of exon 5
CTCCCACACATGTACTGCTGGGGCATTTGGCCAGTTTGCTACTGGAATAGGTAACACCGATGCTGGTTTTGTATTGGGCACTGGAAAGATCCTGCTCAAGgttactgaatcctcttttgtctccttaatgttttagttatgtttttcccctcaatttgagtttctgtgtggatgttgtaactcatagatatcttggtttt
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CTCGCATACTTGCACTGCTGGAGCGTTTGGACAATTCGCTACTGGAATAGGAAACACCGATGCTGGTTTCATCATGGGAACTGGAAAAATTTTACTAAAGgcaagtaggcgct-ttttgcatctttgtttcttc--ttacaagcttcgctactgtctag-----------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110688159|gb|EE066391.1|EE066391EST: GTAACACCGATGCTGGTTTTGTATTGGGCACTGGAAAGATCCTGCTCAAG GTGCCTCCCACATTGAGATTTGTTATGGATGGAGAAATGCCTGATTACTTG
genomic: GTAACACCGATGCTGGTTTTGTATTGGGCACTGGAAAGATCCTGCTCAAGgttactgaat ... ttaattgcagGTGCCTCCCACATTGAGATTTGTTATGGATGGAGAAATGCCTGATTACTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCCCACACATGTACTGCTGGGGCATTTGGCCAGTTTGCTACTGGAATAGGTAACACCGATGCTGGTTTTGTATTGGGCACTGGAAAGATCCTGCTCAAGgttactgaatcctcttttgtctccttaatgttttagttatgtttttcccctcaatttgagtttctgtgtggatgttgtaactcatagatatcttggtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcccctc