1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TAAGCTAGACCAGGAAATTAAATCATGGCTTGCATTTGCTGCCCAGAAGATTGTTGAAGTGAATGCCTTGGCCAAGGCATTGGCTGGTCACAAAGAGGAGgtatcctttgttctcgttctttaattgcttctaaatatctaattgtaaaaactgacagtttattgtggttttttaaatattcaatggatgtcaatgatgg...
species | Vitis vinifera |
transcript | Vv08s0056g01570.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGTTGAAGTGAATGCCTTGGCCAAGGCATTGGCTGGTCGCAAAGAGGAG GCATTCTTCTCTGACAATGCCGCAGCTCAGGCTTCAAGGAAGTCCTCCCCAEST: gi|161708072|gb|FC055712.1|FC055712
genomic: TTGTTGAAGTGAATGCCTTGGCCAAGGCATTGGCTGGTCACAAAGAGGAGgtatcctttg ... ttattttcagGCATTCTTCTCTGACAATGCCTCAGCTCAGGCTTCAAGGAAGTCCTCCCCA
EST: GTTGAAGTGAATGCCTTGGCCAAGGCATTGGCTGGTCACAAAGAGGAG GCATTCTTCTCTGACAATGCCGT-AGCTCAGGCTTCAAGGAAGTCCTCCCCEST: gi|110429998|gb|EC996518.1|EC996518
genomic: GTTGAAGTGAATGCCTTGGCCAAGGCATTGGCTGGTCACAAAGAGGAGgtatcctttg ... ttattttcagGCATTCTTCTCTGACAATGCC-TCAGCTCAGGCTTCAAGGAAGTCCTCCCC
EST: GTGAATGCCTTGGCCAAGGCATTGGCTGGTCGCAAAGAGGAG GCATTCTTCTCTGACAATGCCGCAGCTCAGGCTTCAAGGAAGTCCTCCCCAEST: gi|352773499|gb|FQ472281.1|FQ472281
genomic: GTGAATGCCTTGGCCAAGGCATTGGCTGGTCACAAAGAGGAGgtatcctttg ... ttattttcagGCATTCTTCTCTGACAATGCCTCAGCTCAGGCTTCAAGGAAGTCCTCCCCA
EST: TGTTGAAGTGAATGCCTTGGCCAAGGCATTGGCTGGGTCACAAAGAGGAG GCATTCTTCTCTGACAATGCCTCAGCTCAGGCTTCAAG-AAGTCCTCCCCAEST: gi|32246818|gb|CD712637.1|CD712637
genomic: TGTTGAAGTGAATGCCTTGGCCAAGGCATTGGCTGG-TCACAAAGAGGAGgtatcctttg ... ttattttcagGCATTCTTCTCTGACAATGCCTCAGCTCAGGCTTCAAGGAAGTCCTCCCCA
EST: CCAAGGCATTGGCTGGTCGCAAAGAGGAG GCATTCTTCTCTGACAATGCCGCAGCTCAGGCTTCAAGGAAGTCCTCCCCAEST: gi|110698652|gb|EE076398.1|EE076398
genomic: CCAAGGCATTGGCTGGTCACAAAGAGGAGgtatcctttg ... ttattttcagGCATTCTTCTCTGACAATGCCTCAGCTCAGGCTTCAAGGAAGTCCTCCCCA
EST: TTGTTGAAGTGAATGCCTTGGCCAAGGCATTGGCTGGTCGCAAAGAGGAG GCATTCTTCTCTGACAATGCCGCAGCTCAGGCTTCAAGGAAGTCCTCCCCAEST: gi|110402853|gb|EC963625.1|EC963625
genomic: TTGTTGAAGTGAATGCCTTGGCCAAGGCATTGGCTGGTCACAAAGAGGAGgtatcctttg ... ttattttcagGCATTCTTCTCTGACAATGCCTCAGCTCAGGCTTCAAGGAAGTCCTCCCCA
EST: TTGTTGAAGTGAATGCCTTGGCCAAGGCATTGGCTGGTCGCAAAGAGGAG GCATTCTTCTCTGACAATGCCGCAGCTCAGGCTTCAAGGAAGTCCTCCCCAEST: gi|110688611|gb|EE067363.1|EE067363
genomic: TTGTTGAAGTGAATGCCTTGGCCAAGGCATTGGCTGGTCACAAAGAGGAGgtatcctttg ... ttattttcagGCATTCTTCTCTGACAATGCCTCAGCTCAGGCTTCAAGGAAGTCCTCCCCA
EST: TTGTTGAAGTGAATGCCTTGGCCAAGGCATTGGCTGGTCGCAAAGAGGAG GCATTCTTCTCTGACAATGCCGCAGCTCAGGCTTCAAGGAAGTCCTCCCCAEST: gi|156735832|gb|EV239953.1|EV239953
genomic: TTGTTGAAGTGAATGCCTTGGCCAAGGCATTGGCTGGTCACAAAGAGGAGgtatcctttg ... ttattttcagGCATTCTTCTCTGACAATGCCTCAGCTCAGGCTTCAAGGAAGTCCTCCCCA
EST: TTGTTGAAGTGAATGCCTTGGCCAAGGCATTGGCTGGTCACAAAGAGGAA GCATTCTTCTCTGACAATGCCGT-AGCTCAGGCTTCAGGGA-GTCCTCCCCEST: gi|33408742|gb|CF214369.1|CF214369
genomic: TTGTTGAAGTGAATGCCTTGGCCAAGGCATTGGCTGGTCACAAAGAGGAGgtatcctttg ... ttattttcagGCATTCTTCTCTGACAATGCC-TCAGCTCAGGCTTCAAGGAAGTCCTCCCC
EST: TTGTTGAAGTGAATGCCTTGGCCAAGGCATTGGCTGGTCGCAAAGAGGAG GCATTCTTCTCTGACAATGCCGCAGCTCAGGCTTCAAGGAAGTCCTCCCCAEST: gi|161721618|gb|FC070828.1|FC070828
genomic: TTGTTGAAGTGAATGCCTTGGCCAAGGCATTGGCTGGTCACAAAGAGGAGgtatcctttg ... ttattttcagGCATTCTTCTCTGACAATGCCTCAGCTCAGGCTTCAAGGAAGTCCTCCCCA
EST: TTGTTGAAGTGAATGCCTTGGCCAAGGCATTGGCTGGTCGCAAAGAGGAG GCATTCTTCTCTGACAATGCCGCAGCTCAGGCTTCAAGGAAGTCCTCCCCAEST: gi|110719746|gb|EE095143.1|EE095143
genomic: TTGTTGAAGTGAATGCCTTGGCCAAGGCATTGGCTGGTCACAAAGAGGAGgtatcctttg ... ttattttcagGCATTCTTCTCTGACAATGCCTCAGCTCAGGCTTCAAGGAAGTCCTCCCCA
EST: TTGTTGAAGTGAATGCCTTGGCCAAGGCATTGGCTGGTCACAAAGAGGAG GCATTCTTCTCCGACAATGCCGT-AGCTCAGGCTTCAAGGAAGTCCTCCCC
genomic: TTGTTGAAGTGAATGCCTTGGCCAAGGCATTGGCTGGTCACAAAGAGGAGgtatcctttg ... ttattttcagGCATTCTTCTCTGACAATGCC-TCAGCTCAGGCTTCAAGGAAGTCCTCCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGCTAGACCAGGAAATTAAATCATGGCTTGCATTTGCTGCCCAGAAGATTGTTGAAGTGAATGCCTTGGCCAAGGCATTGGCTGGTCACAAAGAGGAGgtatcctttgttctcgttctttaattgcttctaaatatctaattgtaaaaactgacagtttattgtggttttttaaatattcaatggatgtcaatgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaaa