Sequence
atgc intronic sequence ATGC exonic sequenceTCTGGAGCTTAGCTTATCCTGGTAGGGAGCTCCCCTCTCTTAAGTCAGAGCTCTGGAAGGAGATGGGTTGGCAAGGTACTGATCCTTCGACAGATTTTAGgtgggtagaggactatacataaacatatggtatttacagacttctctcatgttcatgtgtattaatgtgaatttggtcacacacattttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0056g00790.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os03g20670.1 (Oryza sativa), 5'ss of exon 6
TCTGGAGCTTAGCTTATCCTGGTAGGGAGCTCCCCTCTCTTAAGTCAGAGCTCTGGAAGGAGATGGGTTGGCAAGGTACTGATCCTTCGACAGATTTTAGgtgggtagaggactatacataaacatatggtatttacagacttctctcatgttcatgtgtattaatgtgaatttggtcacacacattttag
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TTTGGAGGTTAGCATACCCCAACCGTGACATTCCTCCACTGAAATCAGAACTATGGAAGGAGATGGGTTGGCAAGGCACTGATCCATCAACTGACTTCAGgtatt-------ccatttattc-cattttctgctc-cagtcgaattcagttacaaagccatctaatgctgatattgtc-cacgcag-----
upper sequence: Vv08s0056g00790.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G174797_T01 (Zea mays), 5'ss of exon 6
TCTGGAGCTTAGCTTATCCTGGTAGGGAGCTCCCCTCTCTTAAGTCAGAGCTCTGGAAGGAGATGGGTTGGCAAGGTACTGATCCTTCGACAGATTTTAGgtgggtagaggactatacataaacatatggtatttacagacttctctcatgttcatgtgtattaatgtgaatttggtcacacacattttag------------------
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TTTGGAAGTTGGCTTACCCTAACAGACAACTTCCTCCTCTGAAGTCAGATCTCTGGAAGGAGATGGGCTGGCAGAACTCCGATCCATCCACAGATTTTAGgttca------gttctgcagtgatg-acgtttcttgataaattgtcatgcattatgttgacatgatttgagccggatgatttgtattttaaagtatcctatgcttgcag
upper sequence: Vv08s0056g00790.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G29990.2 (Glycine max), 5'ss of exon 7
TCTGGAGCTTAGCTTATCCTGGTAGGGAGCTCCCCTCTCTTAAGTCAGAGCTCTGGAAGGAGATGGGTTGGCAAGGTACTGATCCTTCGACAGATTTTAGgtg---ggtagaggactatacataaacatatggtatttacagacttctctcatgttcatgtgtattaatgtgaatttggtcacacacattttag---------
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TGTGGAAATTGGCTTACCCGGACAGGGAGCTTCCTTCACTTAAATCAGACCTTTGGAAGGAAATGGGATGGCAAGGTTCTGACCCTTCAACAGATTTTAGgtatctggtccaaagcaatgcattaactttaagaag--agagggtgggatagtgttt-tattcagcaacaggtcaaagactaaaaatattatctgagaccatt
upper sequence: Vv08s0056g00790.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA03G00740.2 (Glycine max), 5'ss of exon 6
TCTGGAGCTTAGCTTATCCTGGTAGGGAGCTCCCCTCTCTTAAGTCAGAGCTCTGGAAGGAGATGGGTTGGCAAGGTACTGATCCTTCGACAGATTTTAGgtgggtagaggactatacataaacatatggtatttacagacttctctcatgttcatgtgtattaatgtgaatttggtcacacacattttag--------------
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TGTGGAAATTGGCTTACCCTGACAGGGAGCTTCCTTCGCTTAAATCAGACCTTTGGAAGGAAATGGGATGGCAAGGTTCAGACCCTTCAACAGATTTTAGgtgtgcaa-----tctaaagcaatgcattaactttaaggggagagggtgggagcttgggtagggatagggttttattcagcaacaggtcaaagactaaaaatatt
upper sequence: Vv08s0056g00790.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G03610.1 (Arabidopsis thaliana), 5'ss of exon 6
TCTGGAGCTTAGCTTATCCTGGTAGGGAGCTCCCCTCTCTTAAGTCAGAGCTCTGGAAGGAGATGGGTTGGCAAGGTACTGATCCTTCGACAGATTTTAGgtgggtag----aggactatacat---aaacatatggtatttacagacttctctcatgttcatgtgtattaatgtgaatttggtcacacacattttag
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TATGGAGGCTAGCTTATCCACAGAGAGAACTACCACCTCTTAAATCTGAACTCTGGAAGGAAATGGGTTGGCAAGGAACAGACCCTTCAACAGATTTTCGgtacacaattttagctctggtcatgcaaatcttcttatatctagtcattttactgatgtttggtttcattaac-tggtttttgtag------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|349829973|gb|FQ420233.1|FQ420233EST: CTCTGGAAGGAGATGGGTTGGCAAGGTACTGATCCTTCGACAGATTTTAG GGGTGGCGGATTTATATCATTGGAGAATCTTATCTTTTT-GCCAAG
genomic: CTCTGGAAGGAGATGGGTTGGCAAGGTACTGATCCTTCGACAGATTTTAGgtgggtagag ... cacattttagGGGTGGCGGATTTATATCATTGGAGAATCTTATCTTTTTTGCCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTGGAGCTTAGCTTATCCTGGTAGGGAGCTCCCCTCTCTTAAGTCAGAGCTCTGGAAGGAGATGGGTTGGCAAGGTACTGATCCTTCGACAGATTTTAGgtgggtagaggactatacataaacatatggtatttacagacttctctcatgttcatgtgtattaatgtgaatttggtcacacacattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG