Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAGGGTGCAAATATCTCCGTCAATGCTGTCCACCCAGGGTTGATAATGACCAATCTCTTTCGACATTCTGCCGTTCTAATGAgtatgccttaaaagactccaatttttatttatacacacaatgtttgtgcacaaagggatttttttttccccaaattctcattttcttcttcttgcag

Basic information

species Vitis vinifera
transcript Vv08s0040g03400.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32250068|gb|CD715887.1|CD715887
EST:     CTCTTTCGACATTCTGCCGTTCTAATGA                         AAATTTTGCAATTGCTCTCGTACATCCTATGGAAGAACGTACCACAG
genomic: CTCTTTCGACATTCTGCCGTTCTAATGAgtatgcctta ... cttcttgcagAAATTTTGCAATTGCTCTCGTACATCCTATGGAAGAACGTACCGCAG
EST: gi|71874111|gb|DT023166.1|DT023166
EST:     CCCAGGGTTGATAATGACCAATCTCTTTCGACATTCTGCCGTTCTAATGA                         AAATTTTGCAATTGCT
genomic: CCCAGGGTTGATAATGACCAATCTCTTTCGACATTCTGCCGTTCTAATGAgtatgcctta ... cttcttgcagAAATTTTGCAATTGCT
EST: gi|254916701|gb|GR905527.1|GR905527
EST:     CCCAGGGTTGATAATGACCAATCTCTTTCGACATTCTGCCGTTCTAATGA                         AAATTTTGCAATTGCTCTCGTACATCCTATGGAAGAACGTACCACAG
genomic: CCCAGGGTTGATAATGACCAATCTCTTTCGACATTCTGCCGTTCTAATGAgtatgcctta ... cttcttgcagAAATTTTGCAATTGCTCTCGTACATCCTATGGAAGAACGTACCGCAG
EST: gi|110378703|gb|EC943847.1|EC943847
EST:     CCCAGGGTTGATAATGACCAATCTCTTTCGACATTCTGCCGTTCTAATGA                         AAATTTTGCAATTGCTCTCGTACATCCTATGGAAGAACGTACCACAG
genomic: CCCAGGGTTGATAATGACCAATCTCTTTCGACATTCTGCCGTTCTAATGAgtatgcctta ... cttcttgcagAAATTTTGCAATTGCTCTCGTACATCCTATGGAAGAACGTACCGCAG
EST: gi|110417471|gb|EC983528.1|EC983528
EST:     CCCAGGGTTGATAATGACCAATCTCTTTCGACATTCTGCCGTTCTAATGA                         AAATTTTGCAATTGCTCTCGTACATCCTATGGAAGAACGTACCGCAG
genomic: CCCAGGGTTGATAATGACCAATCTCTTTCGACATTCTGCCGTTCTAATGAgtatgcctta ... cttcttgcagAAATTTTGCAATTGCTCTCGTACATCCTATGGAAGAACGTACCGCAG
EST: gi|110425890|gb|EC992285.1|EC992285
EST:     CCCAGGGTTGATAATGACCAATCTCTTTCGACATTCTGCCGTTCTAATGA                         AAATTTTGCAATTGCTCTCGTACATCCTATGGAAGAACGTACCACAG
genomic: CCCAGGGTTGATAATGACCAATCTCTTTCGACATTCTGCCGTTCTAATGAgtatgcctta ... cttcttgcagAAATTTTGCAATTGCTCTCGTACATCCTATGGAAGAACGTACCGCAG
EST: gi|110377232|gb|EC942294.1|EC942294
EST:     CCCAGGGTTGATAATGACCAATCTCTTTCGACATTCTGCCGTTCTAATGA                         AAATTTTGCAATTGCTCTCGTACATCCTATGGAAGAACGTACCACAG
genomic: CCCAGGGTTGATAATGACCAATCTCTTTCGACATTCTGCCGTTCTAATGAgtatgcctta ... cttcttgcagAAATTTTGCAATTGCTCTCGTACATCCTATGGAAGAACGTACCGCAG