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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTGTACGCAGATCCTAGCCACTCGTCATATGAAGTACTGGGATTTGTTTCTGGAGTTTTAAGCACATTTACTCCCCAGgtacttaagaaatgctgtgttacgaatgcacacattctatctccttgtttaattataagaatgctagcagcttatacatgtgatagtctcaatttttggggttttttaaactgcatttagctttagtttctaagttgcttccataacattttag

Basic information

species Vitis vinifera
transcript Vv08s0040g03130.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26263854|gb|CA814917.1|CA814917
EST:     ATGAAGTACTGGGATTTGTTTCTGGAGTTTTAAGCACATTTACTCCCCAG                         GCAGGTTTAAAGATTATACAGTTGTACATGGAAGGTTATCGACAGGACTGG
genomic: ATGAAGTACTGGGATTTGTTTCTGGAGTTTTAAGCACATTTACTCCCCAGgtacttaaga ... aacattttagGCAGGTTTAAAGATTATACAATTGTACATGGAAGGTTATCGACAGGACTGG
EST: gi|110374235|gb|EC938881.1|EC938881
EST:     ATGAAGTACTGGGATTTGTTTCTGGAGTTTTAAGCACATTTACTCCCCAG                         GCAGGTTTAAAGATTATACAGTTGTACATGGAAGGTTATCGACAGGACTGG
genomic: ATGAAGTACTGGGATTTGTTTCTGGAGTTTTAAGCACATTTACTCCCCAGgtacttaaga ... aacattttagGCAGGTTTAAAGATTATACAATTGTACATGGAAGGTTATCGACAGGACTGG
EST: gi|110731056|gb|EE108844.1|EE108844
EST:     ATGAAGTACTGGGATTTGTTTCTGGAGTTTTAAGCACATTTACTCCCCAG                         GCAGGTTTAAAGATTATACAATTGTACATGGAAGGTTATCGACAGGACTGG
genomic: ATGAAGTACTGGGATTTGTTTCTGGAGTTTTAAGCACATTTACTCCCCAGgtacttaaga ... aacattttagGCAGGTTTAAAGATTATACAATTGTACATGGAAGGTTATCGACAGGACTGG
EST: gi|351021722|gb|FQ437107.1|FQ437107
EST:     TGAAGTACTGGGATTTGTTTCTGGAGTTTTTAAGCACATTTACTCCCCAG                         GCAGGTTTAAAGATTATACAATTGTACATGGAAGGTTATCGACAGGACTGG
genomic: TGAAGTACTGGGATTTGTTTCTGGAGTTTT-AAGCACATTTACTCCCCAGgtacttaaga ... aacattttagGCAGGTTTAAAGATTATACAATTGTACATGGAAGGTTATCGACAGGACTGG
EST: gi|110360893|gb|EC924336.1|EC924336
EST:     ATGAAGTACTGGGATTTGTTTCTGGAGTTTTAAGCACATTTACTCCCCAG                         GCAGGTTTAAAGATTATACAGTTGTACATGGAAGGTTATCGACAGGACTGG
genomic: ATGAAGTACTGGGATTTGTTTCTGGAGTTTTAAGCACATTTACTCCCCAGgtacttaaga ... aacattttagGCAGGTTTAAAGATTATACAATTGTACATGGAAGGTTATCGACAGGACTGG