Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCAGGAAATCCCACAATTTCCATCTGTTCAAACTGATCACATGTCTGCATCAGCATCCAGATCTGCTGTCACACCACGACGAATTTCCTTTAATAATCGgtatcataattttctgatttaattgccttgttaatcatttttgagagggggccaccctctgccagctccaccaccagtatgatctgtgttgatttatttctttgattatttatcatctgtttatag

Basic information

species Vitis vinifera
transcript Vv08s0032g00920.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110720524|gb|EE096522.1|EE096522
EST:     TCAGCATCCAGATCTGCTGTCACACCACGACGAATTTCCTTTAATAATCG                         CAGCTCTGCAAGTCAATCTTCACCTCCAGATCAAGATAGAGCAGGACCTTC
genomic: TCAGCATCCAGATCTGCTGTCACACCACGACGAATTTCCTTTAATAATCGgtatcataat ... ctgtttatagCAGCTCTGCAAGTCAATCTTCACCTCCAGATCAAGATAGAGCAGGACCTTC
EST: gi|71867930|gb|DT016985.1|DT016985
EST:     TCAGCATCCAGATCTGCTGTCACACCACGACGAATTTCCTTTAATAATCG                         CAGCTCTGCAAGTCAATCTTCACCTCCAGATCAAGATAGAGCAGGACCTTC
genomic: TCAGCATCCAGATCTGCTGTCACACCACGACGAATTTCCTTTAATAATCGgtatcataat ... ctgtttatagCAGCTCTGCAAGTCAATCTTCACCTCCAGATCAAGATAGAGCAGGACCTTC
EST: gi|77581070|gb|DV219460.1|DV219460
EST:     TCAGCATCCAGATCTGCTGTCACACCACGACGAATTTCCTTTAATAATCG                         CAGCTCTGCAAGTCAATCTTCACCTCCAGATCAAGATAGAGCAGGACCTTC
genomic: TCAGCATCCAGATCTGCTGTCACACCACGACGAATTTCCTTTAATAATCGgtatcataat ... ctgtttatagCAGCTCTGCAAGTCAATCTTCACCTCCAGATCAAGATAGAGCAGGACCTTC
EST: gi|351018608|gb|FQ424715.1|FQ424715
EST:     TCAGCATCCAGATCTGCTGTCACACCACGACGAATTTCCTTTAATAATCG                         CAGCTCTGCAAGTCAATCTTCACCTCCAGATCAAGATAGAGCAGGACCTTC
genomic: TCAGCATCCAGATCTGCTGTCACACCACGACGAATTTCCTTTAATAATCGgtatcataat ... ctgtttatagCAGCTCTGCAAGTCAATCTTCACCTCCAGATCAAGATAGAGCAGGACCTTC
EST: gi|110398157|gb|EC964318.1|EC964318
EST:     TCAGCATCCAGATCTGCTGTCACACCACGACGAATTTCCTT-AATAATCG                         C---TCTGCAAGTCAATC
genomic: TCAGCATCCAGATCTGCTGTCACACCACGACGAATTTCCTTTAATAATCGgtatcataat ... ctgtttatagCAGCTCTGCAAGTCAATC
EST: gi|351024205|gb|FQ423628.1|FQ423628
EST:     TCAGCATCCAGATCTGCTGTCACACCACGACGAATTTCCTTTAATAATCG                         CAGCTCTGCAAGTCAATCTTCACCTCCAGATCAAGATAGAGCAGGACCTTC
genomic: TCAGCATCCAGATCTGCTGTCACACCACGACGAATTTCCTTTAATAATCGgtatcataat ... ctgtttatagCAGCTCTGCAAGTCAATCTTCACCTCCAGATCAAGATAGAGCAGGACCTTC
EST: gi|30137955|gb|CB923293.1|CB923293
EST:     TCAGCATCCAGATCTGCTGTCACACCACGACGAATTTCCTTTAATAATCG                         C---TCTGCAAGTCAATCTTCACCTCCAGATCAAGATAGAGCAGGACCTTC
genomic: TCAGCATCCAGATCTGCTGTCACACCACGACGAATTTCCTTTAATAATCGgtatcataat ... ctgtttatagCAGCTCTGCAAGTCAATCTTCACCTCCAGATCAAGATAGAGCAGGACCTTC
EST: gi|161720658|gb|FC070263.1|FC070263
EST:     TCAGCATCCAGATCTGCTGTCACACCACGACGAATTTCCTTTAATAATCG                         CAGCTCTGCAAGTCAATCTTCACCTCCAGATCAAGATAGAGCAGGACCTTC
genomic: TCAGCATCCAGATCTGCTGTCACACCACGACGAATTTCCTTTAATAATCGgtatcataat ... ctgtttatagCAGCTCTGCAAGTCAATCTTCACCTCCAGATCAAGATAGAGCAGGACCTTC