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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAATTGCTAAGTCCTTGGCAAAAGGTCTAGTTGAAAATGGCAGTGAAATACTTTATAAGGCAAATGTGACTAGCATTATATTGGCGCAGGGAAAGGCCgtgagtttgaccttagtcttgtggatagatgatgttaaaattcctatacttggtacttattttatagatgaagtgagatttttattttgctttgcattgtag

Basic information

species Vitis vinifera
transcript Vv08s0032g00800.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110389204|gb|EC954024.1|EC954024
EST:     TACTTTATAAGGCAAATGTGACTAGCATTATATTGGCGCAGGGAAAGGCC                         ATGGGAGTGAAGCTTTCAGATGGAAGGGAGTTCTTTGCCAAAACCATAGTA
genomic: TACTTTATAAGGCAAATGTGACTAGCATTATATTGGCGCAGGGAAAGGCCgtgagtttga ... tgcattgtagGTGGGAGTGAAGCTTTCAGATGGAAGGGAGTTCTTTGCCAAAACCATAGTA
EST: gi|161714576|gb|FC063560.1|FC063560
EST:     TACTTTATAAGGCAAATGTGACTAGCATTATATTGGCGCAGGGAAAGGCC                         ATGGGAGTGAAGCTTTCAGATGGAAGGGAGTTCTTTGCCAAAAC-ATAGTA
genomic: TACTTTATAAGGCAAATGTGACTAGCATTATATTGGCGCAGGGAAAGGCCgtgagtttga ... tgcattgtagGTGGGAGTGAAGCTTTCAGATGGAAGGGAGTTCTTTGCCAAAACCATAGTA