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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTCCAGTCTATCACACTGCTTTTGACTCCTATGACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCATGTGGCTGgttagcttcttttccttctaggatgcattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatagttttctgttttttaccgcctcag

Basic information

species Vitis vinifera
transcript Vv08s0032g00670.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0032g00670.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G11100.1 (Glycine max), 5'ss of exon 7
ATTTTCCAGTCTATCACACTGCTTTTGACTCCTATGACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCATGTGGCTGgttagcttcttt--------tccttctaggatgcattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatag-ttttctgttttttaccgcctcag
||| ||| ||||||||||||||||| || |||||| |||||||||||||   ||| |||||||| ||||| || ||||  ||||||||| ||  ||          ||  ||| | | ||| |   ||| ||||  |  ||  || |  ||| |   |  | ||||   |  || | ||| | | |||  ||||||||| |||   |  | ||
ATTATCCTGTCTATCACACTGCTTTCGATTCCTATAACTGGATGACAAAGTTTGGAGATCCATTCTTTCAGCGCCATGAAGCTGgttagatttcttgtttaaccctctcttagcaagaatttt--gaaatgattattttatagaccaataaa-ttgttcatccatttgtaaatcat-aagatgatatatcttttctgttctttgttgtattag

upper sequence: Vv08s0032g00670.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G39080.1 (Glycine max), 5'ss of exon 6
ATTTTCCAGTCTATCACACTGCTTTTGACTCCTATGACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCATGTGGCTGgttagcttcttttccttctaggatgcattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatagttttctgttttttaccgcctcag
||||||| |||||||||||||| || ||||||||| |||||||| || |  |||| |||||||| || || || ||||| ||||||||| ||  |   ||| ||  |||  ||    |     |||| |  |||||||  | |||||  ||   ||  ||||        |   |  | | |||||||| ||||   |   |||
ATTTTCCCGTCTATCACACTGCATTCGACTCCTATAACTGGATGGCAGAGTATGGAGATCCATTCTTCCACCGCCATGTTGCTGgttagatttct---cttttaatatggtttaaaaatgtttattttttaatgaact--gtaaatccatgtgaca--gtca-------gaagatgta-aattttctgtgttttgttgtaacag

upper sequence: Vv08s0032g00670.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA03G36430.1 (Glycine max), 5'ss of exon 6
ATTTTCCAGTCTATCACACTGCTTTTGACTCCTATGACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCATGTGGCTGgttagcttcttttccttctaggatg-cattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatagttttctgttttttaccgcctcag
||||||| |||||||||||||| || ||||||||| |||||||| || |  |||| |||||||| || || || ||||| ||||||||| ||  | |  |  | |  |   ||  || | ||   | |||        |  |  ||    |  | ||| ||  |      ||| |   |   ||||||||| |||   |    ||
ATTTTCCCGTCTATCACACTGCGTTCGACTCCTATAACTGGATGGCAGAGTATGGAGATCCATTCTTCCACCGCCATGTTGCTGgttagatttctcttttaattgcttaatatggtttacaagtctctatt------tttagtgaactgttaatccat-gtggcagtcataagatgtaac--ttttctgttctttgttgtaatag

upper sequence: Vv08s0032g00670.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G54720.1 (Arabidopsis thaliana), 5'ss of exon 6
ATTTTCCAGTCTATCACACTGCTTTTGACTCCTATGACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCATGTGGCTGgttagcttcttttccttctaggatgcattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatagttttctgttttttac-cgcctcag
||| ||| |||||||||||||| |||||||||||||| |||||||   || | |  |||||||||||||| |||||||| ||| || |   | |      |||    || ||   | |  |   ||||   ||    |  |    |||  | |    ||       ||||  ||  |    || | || ||| ||      ||||
ATTATCCTGTCTATCACACTGCATTTGACTCCTATGATTGGATGATCCACAACGCAGATCCATTGTTTCACCGTCATGTTGCTAgtaaagatttcacttctctcttttg-atctattattatcttttagttatttgttctgtttttcatggatgttatgaagagaattcactctctc----ttctttgctttctatatttatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110377414|gb|EC942476.1|EC942476
EST:     TGACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCATGTGGCTG                         TAGCTGGAGTTTGGGGACTTCTAGCTCTTCACCTGGCTGATGATCCTATTT
genomic: TGACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCATGTGGCTGgttagcttct ... accgcctcagTAGCTGGAGTTTGGGGACTTCTAGCTCTTCACCTGGCTGATGATCCTATTT