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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTAGGTTCACGCCGGGTAAAGGCAATTGCAGCAGCTAAACATCACACTGTTGTTGCAACAGAGGGTGGGGAAGTGTTCACTTGGGGATCCAATAGAGgtaaacttttagcgggtattttagactaagttctgaatttgagtttgccaatccaatcaattggttatgattgttgaatccagctctgttggccatatta...

Basic information

species Vitis vinifera
transcript Vv08s0032g00280.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0032g00280.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G29100.1 (Glycine max), 5'ss of exon 4
GGTTTAGGTTCACGCCGGGTAAAGGCAATTGCAGCAGCTAAACATCACACTGTTGTTGCAACAGAGGGTGGGGAAGTGTTCACTTGGGGATCCAATAGAGgtaaacttt--tagcgggtattttagactaagttctgaatttgagtttgccaatccaatcaattggttatgattgttgaatccagctctgttggccatatta-
||| | ||||| ||| | || | ||||||||  |||||||| ||||| |  ||| |||| ||  |||||||||||||||||||||||||||||||||||||||||  ||   |      || || |  |||||| ||| | |  ||  |    | |  | || |      |||||   |||| |    | ||  ||     | 
GGTCTGGGTTCCCGCAGAGTGATGGCAATTGGTGCAGCTAAGCATCATATGGTTATTGCTACCCAGGGTGGGGAAGTGTTCACTTGGGGATCCAATAGAGgtaaaacttgacaatattcatgtttgtataagttgtgagtctt-gtgagttgttactgtaaactacactggattgc--aatcaaataatcttttcccctgcat

upper sequence: Vv08s0032g00280.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G04300.1 (Glycine max), 5'ss of exon 4
GGTTTAGGTTCACGCCGGGTAAAGGCAATTGCAGCAGCTAAACATCACACTGTTGTTGCAACAGAGGGTGGGGAAGTGTTCACTTGGGGATCCAATAGAGgtaaacttt--tagcgggtattttagactaagttctgaatttgagtttgccaatccaatcaattggttatgattgttg-aatccagctctgttggccatatta
||| | ||||| ||| | || | ||||||||| |||||||| ||||| || ||| || | ||  ||||||||||||||||||| |||||||||||||||||||||  ||          || || |  |||||| ||| | |  ||  |    | |  | || |  |||      ||| |||| |    | ||  ||      
GGTCTGGGTTCCCGCAGAGTGATGGCAATTGCTGCAGCTAAGCATCATACGGTTATTTCTACCCAGGGTGGGGAAGTGTTCACCTGGGGATCCAATAGAGgtaaaacttgacgatattcatgtttgtataagttgtgagtctt-gtgagttgttactgtaaactacttaactaaattgcaatcaaataatcttttcccctg--

upper sequence: Vv08s0032g00280.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G03790.3 (Arabidopsis thaliana), 5'ss of exon 5
GGTTTAGGTTCACGCCGGGTAAAGGCAATTGCAGCAGCTAAACATCACACTGTTGTTGCAACAGAGGGTGGGGAAGTGTTCACTTGGGGATCCAATAGAGgtaaa-cttttagcgggtattttagact--aagttctgaatttgagtttgccaatccaatcaa---ttggttatgattgttgaatccagctctgttggccatatta-------------------------------------------------------------------------------------
|||||||| || ||||| ||||| ||| |||| |||||||| || ||||||||| |||| ||||| || ||||| |||| ||| ||||| ||||||||||||||| |  |||   ||  |  || | |  | |    ||  || |||     | |  | ||||   || |||  ||    | |  |||| |   | |   || | |                                                                                     
GGTTTAGGATCTCGCCGTGTAAAAGCAGTTGCGGCAGCTAAGCACCACACTGTTATTGCTACAGAAGGCGGGGATGTGTACACATGGGGTTCCAATAGAGgtaaaacacttaaacggcttcctatatttcaggaatggatctttagtgctatagtatactcaagttttagtttcgacctctaagcccagtttcttagttaatctgaattagatggaaatatattcaatctatttgggtcacctcgtggtcttttatcttagagtctgatgttgtttgtgatgctcttgtag