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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaatctcccattttaaggtgatttatcaagcatagaatgaatctttgttgaaacttgtgctgataaaatgccctttcccttcttttgtttggt...

Basic information

species Vitis vinifera
transcript Vv08s0007g09010.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110687388|gb|EE064765.1|EE064765
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGAATGATAA-TTCTTGCACGATCAACTGCTACCCCACAAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGA-TGATAAATTCTTGCACGATCAACTGCTACCCCACAAG
EST: gi|34550413|gb|CF518631.1|CF518631
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: gi|34550493|gb|CF518711.1|CF518711
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: gi|110719520|gb|EE094721.1|EE094721
EST:     CCTGATTTCAAAGTTCAATGATGTATCTGGCC-CCATTCTAATTGATCAA                         GGGGAGGATGATAAATTCCTGCACGATC
genomic: CCTGATTTCAAAGTTCAATGATGTATCTG-CTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATC
EST: gi|30303302|gb|CB980096.1|CB980096
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTTTAATTGATCAA                         GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCCCAAGTTTGAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: gi|349825963|gb|FQ415768.1|FQ415768
EST:     CCTGATTTCAAAGTTCAATTGATGTGTCTGCTACCATTCTAATTGATCAA                         GGGGAGGAAGATA
genomic: CCTGATTTCAAAGTTCAAT-GATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATA
EST: gi|110367745|gb|EC931696.1|EC931696
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: gi|110713210|gb|EE088932.1|EE088932
EST:     CCTGATTTCAA-GTTCAATGATGTATCTGCCACCATTCNTA-TTGATCNA                         GGGGGAG-ATGATAA-TTCNTGCACGATCAACTGCTACCC
genomic: CCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTC-TAATTGATCAAgtaagctcaa ... gtttgtgtagGGGG-AGGATGATAAATTCTTGCACGATCAACTGCTACCC
EST: gi|110685290|gb|EE063541.1|EE063541
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: gi|351015480|gb|FQ447309.1|FQ447309
EST:     GCCCGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: gi|46918518|gb|CN547847.1|CN547847
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: gi|110403744|gb|EC969476.1|EC969476
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: gi|110720121|gb|EE095776.1|EE095776
EST:     GCCTGATTTCAA-GTTCAATGATGTATCTGCCAC-ATTCTAATTGATCA-                         GGGGAGGAAGATAA-TTCTTGCACGAT-AACTGGC-ACCC-ACAA-TTTGA
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTG-CTACCCCACAAGTTTGA
EST: gi|351013248|gb|FQ424953.1|FQ424953
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGATGATAAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGA
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAA-TTCTTGCACGATCAACTGCTACCCCACAAGTTTGA
EST: gi|110384036|gb|EC948449.1|EC948449
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: gi|30303234|gb|CB980028.1|CB980028
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: gi|110416702|gb|EC982699.1|EC982699
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: gi|30129940|gb|CB915279.1|CB915279
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: gi|26263619|gb|CA814682.1|CA814682
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: gi|110402055|gb|EC968688.1|EC968688
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: gi|352794409|gb|FQ481640.1|FQ481640
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCC
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCC
EST: gi|110691307|gb|EE069257.1|EE069257
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: gi|351040136|gb|FQ425222.1|FQ425222
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: gi|46918517|gb|CN547846.1|CN547846
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: gi|351027863|gb|FQ448433.1|FQ448433
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: gi|46919080|gb|CN548409.1|CN548409
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: gi|26260233|gb|CA811296.1|CA811296
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: gi|34319644|gb|CF372398.1|CF372398
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
EST: gi|349824260|gb|FQ417647.1|FQ417647
EST:     GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA                         GGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG
genomic: GCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaa ... gtttgtgtagGGGGAGGATGATAAATTCTTGCACGATCAACTGCTACCCCACAAGTTTGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAAgtaagctcaatctcccattttaaggtgatttatcaagcatagaatgaatctttgttgaaacttgtgctgataaaatgccctttcccttcttttgtttggt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttccc