Sequence
atgc intronic sequence ATGC exonic sequenceACCATGGCATGGATACTAGATGAGTACTCGAAATTTCATGGCTACTCACCTGCTGTGGTGACTGGAAAGCCTATTgtgagtatatagcactcttatgatgggttgaaaagtacaggtttataccataattgtaggtttgatttcctgtagatgtaaatttctgctgattcaagta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g07400.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os03g58040.1 (Oryza sativa), 5'ss of exon 5
ACCATGGCATGGATACTAGATGAGTACTCGAAATTTCATGGCTACTCACCTGCTGTGGTGACTGGAAAGCCTATTgtgagtata-----tagcactctt----atgatgggttgaaaagtacag-gtttataccataattgtaggtttgatt------tcctgtagatgtaaatttctgctgattcaagta-----------------------------------------------------------------------
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ACAATGGCGTGGATACTTGACGAATACTCAAAGTTTCATGGTTATTCACCTGCTGTGGTGACTGGAAAACCTGTTgtaagtatcatgtctagcactttttatcatgttgatgtaatgagaatgatgtttccatgaaaatggattatttcatgggggaatttcataagaaataatgaacagtcctttggatagggtttagcaccagtagtattatgactgtctcacacttatgatttggcaatgaaatttttgctcaatacag
upper sequence: Vv08s0007g07400.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G178415_T02 (Zea mays), 5'ss of exon 5
ACCATGGCATGGATACTAGATGAGTACTCGAAATTTCATGGCTACTCACCTGCTGTGGTGACTGGAAAGCCTATTgtgagtatatagcactcttatgatgggttgaaaagtacaggtttataccataattgtaggtttgatttcctgtagatgtaaatttctgctgattcaagta------
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ACAATGGCATGGATACTTGACGAATACTCAAAGTTCCATGGTTACTCACCTGCTGTTGTGACAGGAAAGCCTGTGgtaagcaactatc-----tatactgcattttcaa-catgtatgtgtactgaaaacgatgttttgagatcaaagttgtaaaatgctctgaagatttataaaaggtgg
upper sequence: Vv08s0007g07400.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G28770.1 (Glycine max), 5'ss of exon 4
ACCATGGCATGGATACTAGATGAGTACTCGAAATTTCATGGCTACTCACCTGCTGTGGTGACTGGAAAGCCTATTgtgagta----tatagcactcttatgatgggttgaaaagtacaggtttataccataattgtaggtttgatttcctgtagatgtaaatttctgctgattcaagta
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ACCATGGCATGGATACTAGATGAGTATTCCAAATTCCACGGTTACTCTCCTGCAGTAGTGACTGGAAAACCTATAgtgagtaattgtttgtttctgtcatttcatttcaatggccattgaagtgaaatcaaatcatatgcttcatacactattgcccctcatgttttttcaaactag--
upper sequence: Vv08s0007g07400.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G04560.2 (Glycine max), 5'ss of exon 5
ACCATGGCATGGATACTAGATGAGTACTCGAAATTTCATGGCTACTCACCTGCTGTGGTGACTGGAAAGCCTATTgtgagtatatagcactcttatgatgggttgaaaagtacaggtttataccataattgtaggtttgatttcctgtagatgtaaatttctgctgattcaagta
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ACCATGGCATGGATACTAGATGAGTATTCCAAATTCCACGGTTACTCTCCTGCAGTAGTGACTGGAAAACCTATAgtaagtaattgtttgtttcatttcaa--tggccattgaag--tgaaatca-aatcatatgcttaatatatcattgcccttatgttttttcaaactag---
upper sequence: Vv08s0007g07400.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G26940.1 (Glycine max), 5'ss of exon 4
ACCATGGCATGGATACTAGATGAGTACTCGAAATTTCATGGCTACTCACCTGCTGTGGTGACTGGAAAGCCTATTgtgagtatatagcactcttatgat-----gggttgaaaagtacaggtttataccataattgtaggtt-tgatttcctgtagatgtaaatttctgctgattcaagta
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ACTATGGCATGGATTCTAGATGAGTATTCCAAATTTCATGGCCACTCTCCTGCAGTAGTGACTGGGAAACCTGTAgtaagtagattaaaatctttgtatttctcattttaatgggcattgaactgtgccacaacagcaacttatgaacacactctttctaacacttttttttaca------
upper sequence: Vv08s0007g07400.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G16320.1 (Glycine max), 5'ss of exon 6
ACCATGGCATGGATACTAGATGAGTACTCGAAATTTCATGGCTACTCACCTGCTGTGGTGACTGGAAAGCCTATTgtgagta----tatagcactcttatgatgggttgaaaagtacaggtttataccataattgtaggtttgatttcctgtagatgtaaatttctgctgattcaagta
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ACCATGGCATGGATACTAGACGAGTATTCCAAATTCCACGGTTACTCTCCTGTAGTAGTGACTGGAAAACCTATAgtgagtaattgtttgtttctgccatttcatttcaatggccattgaagtgaaatcaaatcatatgtttcatacactattgcccttcatgttttttcaaactag--
upper sequence: Vv08s0007g07400.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G07940.1 (Glycine max), 5'ss of exon 5
ACCATGGCATGGATACTAGATGAGTACTCGAAATTTCATGGCTACTCACCTGCTGTGGTGACTGGAAAGCCTATTgtgagtatatagcactcttatgat-----gggttgaaaagtacaggtttataccataattgtaggtttgatttcctgtagatgtaaatttctgctgattcaagta----
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ACTATGGCATGGATTCTAGATGAGTATTCCAAATTTCATGGCCACTCTCCAGCAGTAGTGACTGGGAAACCTATAgtacgtagattaaactgtttgtatttctcattttaatgagcattgaactgtgccacaacagcaa---------cttatcaacacactctttctacgattggattattag
upper sequence: Vv08s0007g07400.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G18170.1 (Arabidopsis thaliana), 5'ss of exon 4
ACCATGGCATGGATACTAGATGAGTACTCGAAATTTCATGGCTACTCACCTGCTGTGGTGACTGGAAAGCCTATTgtgagtatatagcactc-ttatgatgggttgaaaagtacaggtttataccataattgtaggtttgatttcctgtagatgtaaatttctgctgattcaagta
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ACAATGGCTTGGATTCTTGATGAATACTCTAAGTTTCATGGATACTCGCCTGCAGTTGTGACTGGAAAACCCATTgtaagtaaagaataatcacaatcttgttttgctaatgactggttta-accac--ctgaatgtttaatgatgtttatgaaccag------------------
upper sequence: Vv08s0007g07400.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: EFJ06181 (Selaginella moellendorffii), 5'ss of exon 4
ACCATGGCATGGATACTAGATGAGTACTCGAAATTTCATGGCTACTCACCTGCTGTGGTGACTGGAAAGCCTATTgtgagtatatagcactcttatgatgggttgaaaagtacaggtttataccataattgtaggtttgatttcctgtagatgtaaatttctgctgattcaagta
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ACCATGGCTTGGATTCTGGATGAGTACTCCAAGTTTCATGGGTACTCTCCAGCAGTAGTCACTGGAAAGCCACTTgtaagcttgtt-tttttttatgatcatttga----------tttgtcctctgatattgtttttgcttctcag----------------------------
upper sequence: Vv08s0007g07400.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: EFJ36430 (Selaginella moellendorffii), 5'ss of exon 4
ACCATGGCATGGATACTAGATGAGTACTCGAAATTTCATGGCTACTCACCTGCTGTGGTGACTGGAAAGCCTATTgtgagtatatagcactcttatgatgggttgaaaagtacaggtttataccataattgtaggtttgatttcctgtagatgtaaatttctgctgattcaagta
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ACCATGGCTTGGATTCTGGATGAGTACTCCAAGTTTCATGGGTACTCTCCAGCAGTAGTCACTGGAAAGCCACTTgtaagcttgtttttct-ttctgattatttga----------tttgtcctctgatattgtttttgcttctcag----------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33404746|gb|CF210373.1|CF210373EST: ACTCGAAATTTCATGGCTACTCACCTGCTGTGGTGACTGGAAAGCCTATT GATCTCGGTGGATCTCTGGGCAGAGATGCAGCTACAGGAAGGGGAGTACTC
genomic: ACTCGAAATTTCATGGCTACTCACCTGCTGTGGTGACTGGAAAGCCTATTgtgagtatat ... tttaaattagGATCTCGGTGGATCTCTGGGCAGAGATGCAGCTACAGGAAGGGGAGTACTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACCATGGCATGGATACTAGATGAGTACTCGAAATTTCATGGCTACTCACCTGCTGTGGTGACTGGAAAGCCTATTgtgagtatatagcactcttatgatgggttgaaaagtacaggtttataccataattgtaggtttgatttcctgtagatgtaaatttctgctgattcaagta
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