1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAGCATCCACAGACCCAGAGTATAAACAGGCACATGCATTCTCTATTTATCTTGTTCAACCACTACTAGCCACTTCCTTGGCTCTACTTAGTTACAACTGgtaagtatactgcaatcctttactgatagctgtttggggctgattcgtggagccttagaaccacatattaatgcttgagtgtgctttcctcacaaaatta...
species | Vitis vinifera |
transcript | Vv08s0007g05920.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTTGTTCAACCACTACTAGCCACTTCCTTGGCTCTACTTAGTTACAACTG GTATCCTTCTTCAGTTTTTGTTGGAGACACTTACACGTATTTTGCTGGAATEST: gi|33405215|gb|CF210842.1|CF210842
genomic: CTTGTTCAACCACTACTAGCCACTTCCTTGGCTCTACTTAGTTACAACTGgtaagtatac ... catattccagGTATCCTTCTTCAGTTTTTGTTGGAGACACTTACACGTATTTTGCTGGAAT
EST: TTCCTTGGCTCTACTTAGTTACAACTG GTATCCTTCTTCAGTTTTTGTTGGAGACACTTACACGTATTTTGCTGGAATEST: gi|33405130|gb|CF210757.1|CF210757
genomic: TTCCTTGGCTCTACTTAGTTACAACTGgtaagtatac ... catattccagGTATCCTTCTTCAGTTTTTGTTGGAGACACTTACACGTATTTTGCTGGAAT
EST: CTTGTTCAACCACTACTAGCCACTTCCTTGGCTCTACTTAGTTACAACTG GTATCCTTCTTCAGTTTTTGTTGGAGACACTTACACGTATTTTGCTGGAATEST: gi|349825767|gb|FQ421866.1|FQ421866
genomic: CTTGTTCAACCACTACTAGCCACTTCCTTGGCTCTACTTAGTTACAACTGgtaagtatac ... catattccagGTATCCTTCTTCAGTTTTTGTTGGAGACACTTACACGTATTTTGCTGGAAT
EST: CAACCACTACTAGCCACTTCCTTGGCTCTACTTAGTTACAACTG GTATCCTTCTTCAGTTTTTGTTGGAGACACTTACACGTATTTTGCTGGAATEST: gi|110377471|gb|EC942537.1|EC942537
genomic: CAACCACTACTAGCCACTTCCTTGGCTCTACTTAGTTACAACTGgtaagtatac ... catattccagGTATCCTTCTTCAGTTTTTGTTGGAGACACTTACACGTATTTTGCTGGAAT
EST: CTTGTTCAACCACTACTAGCCACTTCCTTGGCTCTACTTAGTTACAACTG GTATCCTTCTTCAGTTTTTGTTGGAGACACTTACACGTATTTTGCTGGAAT
genomic: CTTGTTCAACCACTACTAGCCACTTCCTTGGCTCTACTTAGTTACAACTGgtaagtatac ... catattccagGTATCCTTCTTCAGTTTTTGTTGGAGACACTTACACGTATTTTGCTGGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCATCCACAGACCCAGAGTATAAACAGGCACATGCATTCTCTATTTATCTTGTTCAACCACTACTAGCCACTTCCTTGGCTCTACTTAGTTACAACTGgtaagtatactgcaatcctttactgatagctgtttggggctgattcgtggagccttagaaccacatattaatgcttgagtgtgctttcctcacaaaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaaaa