Sequence
atgc intronic sequence ATGC exonic sequenceGTAGGTCAAGAACAATTCTCTCCTAGTTCACCTGGATGGCCACCTTTTATGAGAGTGAACCCAATCTTGGATTGGTCTTACAGgttataaaggctgcttatactaacatatatatcaaactagttcttcttagcaaatgaaaggctgtctgagagcaaagttgcatgttggttgcctaagaag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g04980.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os01g15490.1 (Oryza sativa), 5'ss of exon 5
GTAGGTCAAGAACAATTCTCTCCTAGTTCACCTGGATGGCCACCTTTTATGAGAGTGAACCCAATCTTGGATTGGTCTTACAGgttataaaggctgcttatactaacatatatatcaaactagttcttcttagcaaatgaaaggctgtctga-gagcaaagttgcatgttggttgcctaagaag
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GTTGGTCAAGAGCAGTTCTCGCCTAGTTCACCTGGCTGGCCTCCTTTCATGAGGGTCAATCCTATATTGGACTGGTCATACAGgtttt-----cctcctgatcatgtaaatcaatcaaaa-ggtgcctcctagtctgctaatattcatgtgctaaggaacactatacttc---tgcctcag---
upper sequence: Vv08s0007g04980.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G381933_T03 (Zea mays), 5'ss of exon 5
GTAGGTCAAGAACAATTCTCTCCTAGTTCACCTGGATGGCCACCTTTTATGAGAGTGAACCCAATCTTGGATTGGTCTTACAGgttataaaggctgcttatactaacatatatatcaaactagttcttcttagcaaatgaaaggctgtctgagagcaaagttgcat-gttggttgcctaagaag
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GTTGGTCAAGAACAGTTCTCTCCTAGTTCACCTGGCTGGCCTCCTTTTATGAGGGTGAATCCAATCTTGGATTGGTCATACAGgtt----------tttctcctgat-catgtaacaaatcaagcctttctagtatgc------ctgttcagatgctaaggagcattattttctgtgccag---
upper sequence: Vv08s0007g04980.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G149609_T01 (Zea mays), 5'ss of exon 5
GTAGGTCAAGAACAATTCTCTCCTAGTTCACCTGGATGGCCACCTTTTATGAGAGTGAACCCAATCTTGGATTGGTCTTACAGgttataaaggctgcttatactaacatatatatcaaactagttcttcttagcaaatgaaaggctgtctgagagcaaagttgcatgttggttgcctaagaag
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GTCGGTCAACAAGAGTTCTCCCCTAGCTCGCCCGGCTGGCCTCCTTTCATGAGGGTGAACCCAATCTTGGATTGGTCCTACAGgttt---ggctctcctgatcgaatccctagcttctgctcaacagagagagagagagaacatcgcttttcttggattctaatctgatgccctcgcttgcag
upper sequence: Vv08s0007g04980.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G028010_T01 (Zea mays), 5'ss of exon 6
GTAGGTCAAGAACAATTCTCTCCTAGTTCACCTGGATGGCCACCTTTTATGAGAGTGAACCCAATCTTGGATTGGTCTTACAGgttata-----aaggctgcttatactaacatatatatc-aaactagttcttcttagcaa--atgaaaggctgtctgagagcaaagttg-catgttggttgcctaagaag----------------------------
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GTTGGTCAACAAGAGTTCTCCCCTAGCTCGCCTGACTGGCCTCCTTTCATGAGGGTGAACCCTATCTTGGATTGGTCCTACAGgtttggctcctgaatatattcctgctgctctgctcgcccgagttaactcaactcaatagagaccatttgtttttctttagtaattctaatgccttgcttgcttgcttgcttgcatacttgctgtgggcggcatgcag
upper sequence: Vv08s0007g04980.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA03G34140.1 (Glycine max), 5'ss of exon 5
GTAGGTCAAGAACAATTCTCTCCTAGTTCACCTGGATGGCCACCTTTTATGAGAGTGAACCCAATCTTGGATTGGTCTTACAGgttataaaggctgcttatactaacatatatatcaaactagttcttcttagcaaatgaaaggctgtctgagagcaaagttgcatgttggttgcctaagaag------
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GTTGGTCAAGAACAATTCTCCCCTAGTTCACCTGGGTGGCCACCTTTCATGAGGCTGAATCCCATTTTAGATTGGTCATACAGgttt----gattctttgttctatgctgtttctttttcttg--cttttaattaaataaaattaaaaccagtgcttatatttggtgcttttcttttaaactcttatct
upper sequence: Vv08s0007g04980.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G36860.1 (Glycine max), 5'ss of exon 6
GTAGGTCAAGAACAATTCTCTCCTAGTTCACCTGGATGGCCACCTTTTATGAGAGTGAACCCAATCTTGGATTGGTCTTACAGgttataaaggctgcttatactaacatatatatcaaactagttcttcttagcaaatgaaaggctgtctgagagcaaagttgcatgttggttgcctaagaag------
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GTTGGTCAAGAACAATTCTCCCCTAGTTCGCCTGGGTGGCCACCTTTCATGAGGGTGAATCCCATTTTAGATTGGTCATACAGgttt----gattctttttgcta-tgca-gtttcttcttcatgctttaaattaagtaaaattagaaccagtgcttatatttggtggttttcttttaaactcttatct
upper sequence: Vv08s0007g04980.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G03430.1 (Arabidopsis thaliana), 5'ss of exon 6
GTAGGTCAAGAACAATTCTCTCCTAGTTCACCTGGATGGCCACCTTTTATGAGAGTGAACCCAATCTTGGATTGGTCTTACAGgttataaaggctgcttatactaacatatatatcaaactagttcttcttagcaaatgaaaggctgtctgagagca-aagttgcatgttggttgcctaagaag
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GTTGGTCAAGAGCAATTCTCTCCTAGTTCACCTGGATGGCCTCCCTTTATGAGGGTGAATCCTATATTGGATTGGTCCTACAGgtttctctttctcagtaatcatatcttcttattgctttatctgttaaaatcttattattacttatgttttggtatgcgtgacgtgcagaaaattttgagc-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71855620|gb|DT004675.1|DT004675EST: GGATGGCCACCTTTTATGAGAGTGAACCCAATCTTGGATTGGTCTTACAG GGATGTGTGGGCCTTTCTTTTAGCGTGCAAGATTCCATACTGCAGTCTTTA
genomic: GGATGGCCACCTTTTATGAGAGTGAACCCAATCTTGGATTGGTCTTACAGgttataaagg ... tcttttccagGGATGTGTGGGCCTTTCTTTTAGCTTGCAAGATTCCATACTGCAGTCTTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTAGGTCAAGAACAATTCTCTCCTAGTTCACCTGGATGGCCACCTTTTATGAGAGTGAACCCAATCTTGGATTGGTCTTACAGgttataaaggctgcttatactaacatatatatcaaactagttcttcttagcaaatgaaaggctgtctgagagcaaagttgcatgttggttgcctaagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagcaaa