1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACGgtttgtctgttttcctttcctgttctgctgttctatatatttttgtagttctctgggacctgtacccacctgtgtggtcaaaatgccaaccagatccata...
species | Vitis vinifera |
transcript | Vv08s0007g04710.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCACTCCAAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACG TTGCAATTGTATTTTCAAA-CCAAGCCACCAGAAGCAAACAAGCCTCAGCCEST: gi|30134998|gb|CB920336.1|CB920336
genomic: CCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACGgtttgtctgt ... aattgtacagTTGCAATTGTATTT-CAAAACCAAGCCACCAGAGGCAAACAAGCCTCAGCC
EST: CCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACG TTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCAAACAAGCCTCAGCCTEST: gi|110710951|gb|EE087592.1|EE087592
genomic: CCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACGgtttgtctgt ... aattgtacagTTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCAAACAAGCCTCAGCCT
EST: CCACTCCAAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACG TTGCAATTGTATTTCAAAACCAAGCCACCAGAAGCAAACAAGCCTCACCCTEST: gi|30133297|gb|CB918636.1|CB918636
genomic: CCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACGgtttgtctgt ... aattgtacagTTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCAAACAAGCCTCAGCCT
EST: CCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCANAAATGTTCACG TTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCAAACAAGCCTCAGCCTEST: gi|110713768|gb|EE089980.1|EE089980
genomic: CCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACGgtttgtctgt ... aattgtacagTTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCAAACAAGCCTCAGCCT
EST: CCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACG TTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCAAACAAGCCTCAGCCTEST: gi|110686098|gb|EE063396.1|EE063396
genomic: CCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACGgtttgtctgt ... aattgtacagTTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCAAACAAGCCTCAGCCT
EST: CCACTCCAAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACG TTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCAAACAAGCCTCAGCCTEST: gi|156739019|gb|EV243140.1|EV243140
genomic: CCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACGgtttgtctgt ... aattgtacagTTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCAAACAAGCCTCAGCCT
EST: CCACTCCAAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACG TTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCAAACAAGCCTCAGCCTEST: gi|71872083|gb|DT021138.1|DT021138
genomic: CCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACGgtttgtctgt ... aattgtacagTTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCAAACAAGCCTCAGCCT
EST: CCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACG TTGCAATTGTATTTCAAAACCAAGC-ACCAGAGGGCAA-CA-GCCTCAGCCEST: gi|71869160|gb|DT018215.1|DT018215
genomic: CCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACGgtttgtctgt ... aattgtacagTTGCAATTGTATTTCAAAACCAAGCCACCAGAGG-CAAACAAGCCTCAGCC
EST: CCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACG TTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCAAACAAGCCTCAGCCCEST: gi|110698196|gb|EE075475.1|EE075475
genomic: CCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACGgtttgtctgt ... aattgtacagTTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCAAACAAGCCTCAGCC-
EST: CCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACG TTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCAAACAAGCCTCAGCCTEST: gi|71869133|gb|DT018188.1|DT018188
genomic: CCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACGgtttgtctgt ... aattgtacagTTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCAAACAAGCCTCAGCCT
EST: CCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAA-TGTTCACG TTGCAATTGTATTTCAAA-CCAAGCCACCAGAGGCAA-CAAGCCTCAGEST: gi|27584644|gb|CB007339.1|CB007339
genomic: CCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACGgtttgtctgt ... aattgtacagTTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCAAACAAGCCTCAG
EST: CCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACG TTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCAAACAAGCCTCAGCCTEST: gi|161712620|gb|FC061943.1|FC061943
genomic: CCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACGgtttgtctgt ... aattgtacagTTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCAAACAAGCCTCAGCCT
EST: CCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACG TTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCAAACAAGCCTCAGCCT
genomic: CCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACGgtttgtctgt ... aattgtacagTTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCAAACAAGCCTCAGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACGgtttgtctgttttcctttcctgttctgctgttctatatatttttgtagttctctgggacctgtacccacctgtgtggtcaaaatgccaaccagatccata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctttcc