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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcctcctgaattttcttactttaagttgttgactcttttgcatcaagtttagaaatatctgaaagttgaagcttctctcacaagtgtcacaactatgtgaaaaaaagaagaaaggaatgaccaccacttctcttttgtctcatacag

Basic information

species Vitis vinifera
transcript Vv08s0007g01980.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110691663|gb|EE070021.1|EE070021
EST:     CTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
genomic: CTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: gi|161713904|gb|FC062870.1|FC062870
EST:     ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGACAGAA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: gi|32245274|gb|CD711093.1|CD711093
EST:     ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: gi|33406522|gb|CF212149.1|CF212149
EST:     ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: gi|110689439|gb|EE065663.1|EE065663
EST:     ACTTGCTTANGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAA                         GTCACTGGAAAACTAGCAGCCTTGGAAGG-TTTGGATGCACGACTGANAGA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTG-AAGGGTTTGGATGCACGACTGAGAGA
EST: gi|110409702|gb|EC975372.1|EC975372
EST:     ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: gi|110380658|gb|EC945941.1|EC945941
EST:     CATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCC-TGAAAGGGTTTGGATGCACGACTGAGAGA
genomic: CATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTG-AAGGGTTTGGATGCACGACTGAGAGA
EST: gi|110697690|gb|EE074900.1|EE074900
EST:     ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGGAAGGGTTTGGATGCACGACTGAGAGA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTG-AAGGGTTTGGATGCACGACTGAGAGA
EST: gi|33406800|gb|CF212427.1|CF212427
EST:     ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: gi|26263205|gb|CA814268.1|CA814268
EST:     ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: gi|30297109|gb|CB973903.1|CB973903
EST:     CTTGCTTAGGGATGTGAAGGATACAACCATT-GANACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTG
genomic: CTTGCTTAGGGATGTGAAGGATACAACCATTAGC-ACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTG
EST: gi|110418075|gb|EC984190.1|EC984190
EST:     ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: gi|33409710|gb|CF215337.1|CF215337
EST:     ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: gi|110713466|gb|EE089412.1|EE089412
EST:     CTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGGCA-CAGAA                         GTCACTGGAAAACTAGCAGCCTTGAAGG
genomic: CTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG-CAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGG
EST: gi|110711679|gb|EE088432.1|EE088432
EST:     ACTTGCTTANGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGAA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAA
EST: gi|110687327|gb|EE064641.1|EE064641
EST:     ACTTGCTTANGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGGAGGGTTTGGATGCACGACTGAGAGAA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: gi|30296907|gb|CB973701.1|CB973701
EST:     TGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
genomic: TGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: gi|110409249|gb|EC974909.1|EC974909
EST:     ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: gi|110718297|gb|EE094970.1|EE094970
EST:     ACTTGCTTANGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGANAGAA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: gi|30321841|gb|CD005103.1|CD005103
EST:     ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: gi|110387831|gb|EC952529.1|EC952529
EST:     ATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
genomic: ATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: gi|110380016|gb|EC945251.1|EC945251
EST:     ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: gi|29783602|gb|CB349901.2|CB349901
EST:     ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCA-GATCTGAGAGA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGA-CTGAGAGA
EST: gi|110732758|gb|EE108326.1|EE108326
EST:     ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: gi|30124736|gb|CB910075.1|CB910075
EST:     ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: gi|110690336|gb|EE067344.1|EE067344
EST:     ACTTGCTTAGGGATGTGAAGGATACAACCATTANCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGANAGAA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: gi|33406603|gb|CF212230.1|CF212230
EST:     ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: gi|110396200|gb|EC961881.1|EC961881
EST:     ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: gi|110401013|gb|EC967604.1|EC967604
EST:     ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA
EST: gi|161721407|gb|FC070435.1|FC070435
EST:     ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGAAAACTAGCAGCCTT
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTT
EST: gi|110712994|gb|EE088527.1|EE088527
EST:     ACTTGCTTANGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG                         GTCACTGGGAAACTANCAGCCTTGAAGGGTTTGGATGCACGACTGANAGAA
genomic: ACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGgttctgtcct ... tctcatacagGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAA