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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATATCCCAAGATACACCTTTAGTTGGTTGGTGAAACCCATGTGGTTGATCATAAgtatgcaaattttctttctggcctcttaatttaaacatggaagcttaaaattttcagataggtgagctaataattgttagtttggttttccttgttag

Basic information

species Vitis vinifera
transcript Vv08s0007g01940.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G17680.1 (Glycine max), 5'ss of exon 5
ATATATCCCAAGATACACCTTTAGTTGGTTGGTGAAACCCATGTGGTTGATCATAAgtatgcaaattttctttctgg--cctcttaatttaaacatggaagcttaaaattttcagataggtgagctaataattgttagtttggttttccttgttag
 || || |||||||| |||||||| ||| |||||||||||||||||||||||||||||||| | | |||||| ||    | | | |||||  ||    |    | ||  |  || ||    | | | |||                          
GTACATTCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGATCATAAgtatgtacactttcttgcttacacttttcaatttggactcatattggtgaacataacaaattttggtggttatag-------------------------

upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G42540.1 (Glycine max), 5'ss of exon 6
ATATATCCCAAGATACACCTTTAGTTGGTTGGTGAAACCCATGTGGTTGATCATAAgtatgcaaattttctttctggcctcttaatttaaacatggaagcttaaaattttcagataggtgagctaataattgttagtttggttttccttgttag
 || || |||||||| |||||||| ||| |||||||||||||||||||||||||||||||| | | |||||| ||  |  |||      ||  ||||  || |||  ||       |||||||  ||||     | ||||||  |   | |   
GTACATTCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGATCATAAgtatgtacactttcttgcttactcctt----ccaatttgga--ctcaaatatt-------ggtgagc--ataacataaattttggtggtttatatag-

upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA03G14200.1 (Glycine max), 5'ss of exon 6
ATATATCCCAAGATACACCTTTAGTTGGTTGGTGAAACCCATGTGGTTGATCATAAgtatgcaaattttctttctggcctcttaatttaaacatggaagcttaaaattttcagatag-gtgagctaataattgttagtttggttttccttgttag
||| || ||||||||||||||||| ||| ||||| |||||||||||| | ||||||||||| | ||  ||| | |   |  ||   || ||| ||||| | ||   || | | |||   |||    ||  |  ||  | | |             
ATACATTCCAAGATACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGTCATAAgtatgtatatgctctctttcttcctttg--ttcaacttggaatcatatttttgtgaaataacatgaat--atgctattttatgtag-------------

upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G27840.1 (Glycine max), 5'ss of exon 6
ATATATCCCAAGATACACCTTTAGTTGGTTGGTGAAACCCATGTGGTTGATCATAAgtatgcaaattttctttctggcctcttaatttaaacatggaagcttaaaattttcagatag-gtgagctaataattgttagtttggttttccttgttag
||| || ||||||||||||||||| ||| ||||| |||||||||||| | ||||||||||| | ||  ||| |   || || |   || ||| ||||| ||||   || | | |||   |||    ||  |  || || | |             
ATACATTCCAAGATACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGTCATAAgtatgtatatgctctctt--gcttccttggttcaacttggaatcttatttttgtgaaataacatgaat--atgctgttttgtgtag-------------

upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G01220.1 (Arabidopsis thaliana), 5'ss of exon 6
ATATATCCCAAGATACACCTTTAGTTGGTTGGTGAAACCCATGTGGTTGATCATAAgtatgcaaattt--tctttctggcctcttaatttaaacatggaagcttaaaatt-ttcagataggtgagctaa---taattgttagtttggttttccttgttag
||| |||||||||||||| |||||||||||||| ||||| |||||||  || ||||||||| |||       ||||     ||  |||||     |      |     || ||  |||   | |  | |   |||   | | | || ||||    |    
ATACATCCCAAGATACACTTTTAGTTGGTTGGTAAAACCAATGTGGTCTATAATAAgtatgtaaaacccgcttttcaaatgtcaaaatttccttcttctttttctggtttattgtgatgtataatatgaaactaaacttgaatatgcttttatcag----