Sequence
atgc intronic sequence ATGC exonic sequenceTTTGAAAATTCCAGGGTTCAAAGATAATGTTTTGACTCATCTCTTAGCTGGTTTGGGGGCGGGTTTTTTCGCAGTCTGTATTGGCTCCCCAGTTGACGTGgtatctctctattttcacatttcctctcttcaaaaagagtttttgttttgtgcattttacagcatgatagtgatactgataaccattctacttaagaatg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01700.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA03G14780.1 (Glycine max), 5'ss of exon 6
TTTGAAAATTCCAGGGTTCAAAGATAATGTTTTGACTCATCTCTTAGCTGGTTTGGGGGCGGGTTTTTTCGCAGTCTGTATTGGCTCCCCAGTTGACGTGgtatctctctattttcacatttcctctcttcaaaaagagtttttgttttgt-gcattttaca-gcatgatagtgatactgataaccattctacttaagaatg
||||||||||||||| |||| || |||||| | |||||||| | |||||| | ||||| || |||||||| ||||||||||||||||||||||| |||||| | || | | | | || | | | || | |||||||| | | | | | ||| || | || | | |||
TTTGAAAATTCCAGGATTCACTGACAATGTTGTAACTCATCTTCTTGCTGGTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTTGATGTGgtaatgttttagaatactaatgaatatccatggttgatttggctttcttattgcattttatatgtagtgtgctaata--aattattgtttcaatatgatatg
upper sequence: Vv08s0007g01700.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G27120.1 (Glycine max), 5'ss of exon 5
TTTGAAAATTCCAGGGTTCAAAGATAATGTTTTGACTCATCTCTTAGCTGGTTTGGGGGCGGGTTTTTTCGCAGTCTGTATTGGCTCCCCAGTTGACGTGgtatctctctattttcacatttcctctcttcaaaaagagtttttgttttgtgcattttacagcatgatagtgatactgataaccattctacttaagaatg---
|||||||||||| || |||| || |||||| | ||||||||| | |||||| | ||||| || ||||| || ||||||||||||||||||||||| |||||| | || | | | | || ||| | |||| | ||||| | | | | ||| || | | | | ||
TTTGAAAATTCCCGGATTCACTGACAATGTTGTAACTCATCTCCTTGCTGGTCTTGGGGCAGGGTTTTTTGCGGTCTGTATTGGCTCCCCAGTTGATGTGgtaatgttttagaatttactaatgaatatccattgttgatttgtcttttat---ttttattgtctcaccattatatatgtagtgtgttcataaataattgtttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33407463|gb|CF213090.1|CF213090EST: GTTTGGGAGCGGGTTTTTTCGCAGTCTGTATTGGCTCCCCAGTTGACGTG GTTAAGTCAAGGATGATGGGAGATTCCACATACAAAAATACACTGGATTGT
genomic: GTTTGGGGGCGGGTTTTTTCGCAGTCTGTATTGGCTCCCCAGTTGACGTGgtatctctct ... tccttttcagGTTAAGTCAAGGATGATGGGAGATTCCACATACAAAAATACACTGGATTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTGAAAATTCCAGGGTTCAAAGATAATGTTTTGACTCATCTCTTAGCTGGTTTGGGGGCGGGTTTTTTCGCAGTCTGTATTGGCTCCCCAGTTGACGTGgtatctctctattttcacatttcctctcttcaaaaagagtttttgttttgtgcattttacagcatgatagtgatactgataaccattctacttaagaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaga