Sequence
atgc intronic sequence ATGC exonic sequenceGTAGAGTGACACCAGAAAGTGTAGTGTACAGCTTTGGGACCTTGTTGCTTGATCTCTTGAGTGGCAAACATATTCCACCAAGCCATgtaattcttctttctttatattactcttattttaaaacagaaactcgtacatgtttttccttatgatctattagtgtttcttggccacaagtggaaaacg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01520.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA03G15830.1 (Glycine max), 5'ss of exon 6
GTAGAGTGACACCAGAAAGTGTAGTGTACAGCTTTGGGACCTTGTTGCTTGATCTCTTGAGTGGCAAACATATTCCACCAAGCCATgtaa--ttcttctttctttatattactcttattttaaaa---cagaaactcgtacatgtttttccttatgatctattagtgtttcttggccacaagtggaaaacg
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GTAGAGTGACTCCAGAGAGTGTGGTTTACAGTTTTGGAACTCTGCTGCTAGATCTCTTGAGTGGTAAACATATTCCACCAAGCCATgtaagcttttccttccattatgaagtactaaaactaaaattccatgagatctt-cacaccattgattttggacaatgatggtgtcaatggctgatatagtt----
upper sequence: Vv08s0007g01520.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G26690.2 (Glycine max), 5'ss of exon 2
GTAGAGTGACACCAGAAAGTGTAGTGTACAGCTTTGGGACCTTGTTGCTTGATCTCTTGAGTGGCAAACATATTCCACCAAGCCATgtaattcttctttctttatattactcttattttaaaacagaaactcgt-acatgtttttccttatgatct--attagtgtttcttggccacaagtggaaaacg
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GTAGAGTGACTCCACAGAGTGTGGTTTACAGTTTTGGAACTCTGCTGCTAGATCTCTTGAGTGGTAAACATATTCCACCAAGCCTTgtaagcttttccttccattgttaagtactaaacaaactaaaattccatgagatcttcaggccattgattttggataatgatgct-gtcaattactgatata--
upper sequence: Vv08s0007g01520.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G26690.1 (Glycine max), 5'ss of exon 8
GTAGAGTGACACCAGAAAGTGTAGTGTACAGCTTTGGGACCTTGTTGCTTGATCTCTTGAGTGGCAAACATATTCCACCAAGCCATgtaattcttctttctttatattactcttattttaaaacagaaactcgt-acatgtttttccttatgatct--attagtgtttcttggccacaagtggaaaacg
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----AGTGACTCCACAGAGTGTGGTTTACAGTTTTGGAACTCTGCTGCTAGATCTCTTGAGTGGTAAACATATTCCACCAAGCCTTgtaagcttttccttccattgttaagtactaaacaaactaaaattccatgagatcttcaggccattgattttggataatgatgct-gtcaattactgatata--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110687454|gb|EE064880.1|EE064880EST: GGACCTTGTTGCTTGATCTCTTGAGTGGCAAACATATTCCACCAAGCCAT GCACTTGATCTGATTCGTGGCAAGAATTTTCTGATGTTGATGGACTCTTGT
genomic: GGACCTTGTTGCTTGATCTCTTGAGTGGCAAACATATTCCACCAAGCCATgtaattcttc ... attcttgcagGCACTTGATCTGATTCGTGGCAAGAATTTTCTGATGTTGATGGACTCTTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTAGAGTGACACCAGAAAGTGTAGTGTACAGCTTTGGGACCTTGTTGCTTGATCTCTTGAGTGGCAAACATATTCCACCAAGCCATgtaattcttctttctttatattactcttattttaaaacagaaactcgtacatgtttttccttatgatctattagtgtttcttggccacaagtggaaaacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggaaaa