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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCGATTTTGGTAGTGGGTCCATGCTTTTAGgtttgtaataccagtcttgttttgaactgtttagcaaatgaacacatcaaacttttgttcaacttagagcttttatcttgtggatacag

Basic information

species Vitis vinifera
transcript Vv08s0007g01340.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349824491|gb|FQ413158.1|FQ413158
EST:     GAGCGATNTTGGTAGTGGGTCCATGCTTTTAG                         GACCTAATGATCCTCGCTGGTTTGGTGGAGTAGGTGGAGACCCCAGCTTTC
genomic: GAGCGATTTTGGTAGTGGGTCCATGCTTTTAGgtttgtaata ... gtggatacagGACCTAATGATCCTCGCTGGTTTGGTGGAGTAGGTGGAGACCCCAGCTTTC
EST: gi|110372149|gb|EC936298.1|EC936298
EST:     GAGCGATTTTGGTAGTGGGTCCATGCTTTTAG                         GACCTAATGATCCTCGCTGGTTTGGTGGAGTAGGTGGAGACCCCAGCTTTC
genomic: GAGCGATTTTGGTAGTGGGTCCATGCTTTTAGgtttgtaata ... gtggatacagGACCTAATGATCCTCGCTGGTTTGGTGGAGTAGGTGGAGACCCCAGCTTTC
EST: gi|110718881|gb|EE096218.1|EE096218
EST:     GAGCGATTTTGGTAGTGGGTCCATGCTTTTAG                         GACCTAATGATCCTCGCTGGGTTGGGTGGAGTAAGTGGGAGACCCCAGCTT
genomic: GAGCGATTTTGGTAGTGGGTCCATGCTTTTAGgtttgtaata ... gtggatacagGACCTAATGATCCTCGCTGGTTTGG-TGGAGTAGGTGG-AGACCCCAGCTT
EST: gi|110356854|gb|EC919981.1|EC919981
EST:     GAGCGATTTTGGTAGTGGGTCCATGCTTTTAG                         GACCTAATGATCCTCGCTGGTTTGGTGGAGTAGGGTGGAGACCCCAGCTTT
genomic: GAGCGATTTTGGTAGTGGGTCCATGCTTTTAGgtttgtaata ... gtggatacagGACCTAATGATCCTCGCTGGTTTGGTGGAGTAGG-TGGAGACCCCAGCTTT
EST: gi|351023717|gb|FQ448268.1|FQ448268
EST:     GAGCGATTTTGGTAGTGGGTCCATGCTTTTAG                         GACCTAATGATCCTCGCTGGTTTGGTGGAGTAGGTGGAGACCCCAGCTTTC
genomic: GAGCGATTTTGGTAGTGGGTCCATGCTTTTAGgtttgtaata ... gtggatacagGACCTAATGATCCTCGCTGGTTTGGTGGAGTAGGTGGAGACCCCAGCTTTC
EST: gi|110688830|gb|EE067830.1|EE067830
EST:     GAGCGATTTTGGGAGGGGGTC-ATGCTTTTAG                         GACCTAATGATCCTCGCTGGTTTGGGGGAGGAGGTGGAGACCCCTTCTTTC
genomic: GAGCGATTTTGGTAGTGGGTCCATGCTTTTAGgtttgtaata ... gtggatacagGACCTAATGATCCTCGCTGGTTTGGTGGAGTAGGTGGAGACCCCAGCTTTC
EST: gi|110718248|gb|EE094865.1|EE094865
EST:     GAGCGATTTTGGTAGTGGGTCCATGCTTTTAG                         GAACTAATGATCCTCGCTGGGTTTGGTGGAGTAGGTGGGAGACCC-AGCTT
genomic: GAGCGATTTTGGTAGTGGGTCCATGCTTTTAGgtttgtaata ... gtggatacagGACCTAATGATCCTCGCTGG-TTTGGTGGAGTAGGTGG-AGACCCCAGCTT
EST: gi|110731453|gb|EE105880.1|EE105880
EST:     GAGCGATTTTGGTAGTGGGTCCATGCTTTTAG                         GACCTAATGATCCTCGCTGGTTTGG
genomic: GAGCGATTTTGGTAGTGGGTCCATGCTTTTAGgtttgtaata ... gtggatacagGACCTAATGATCCTCGCTGGTTTGG
EST: gi|37187578|gb|CF606931.1|CF606931
EST:     GAGCGATTTTGGTAGTGGGTCCATGCTTTTAG                         GACCTAATGATCCTCGCTGGTTTGGTGGAGTAGGTGG
genomic: GAGCGATTTTGGTAGTGGGTCCATGCTTTTAGgtttgtaata ... gtggatacagGACCTAATGATCCTCGCTGGTTTGGTGGAGTAGGTGG
EST: gi|349830477|gb|FQ416775.1|FQ416775
EST:     GAGCGATTTTGGTAGTGGGTCCATGCTTTTAG                         GACCTAATGATCCTCGCTGGTTTGGTGGAGTAGGTGGAGACCCCAGCTTTC
genomic: GAGCGATTTTGGTAGTGGGTCCATGCTTTTAGgtttgtaata ... gtggatacagGACCTAATGATCCTCGCTGGTTTGGTGGAGTAGGTGGAGACCCCAGCTTTC