Sequence
atgc intronic sequence ATGC exonic sequenceGTTCAAATAATAACCTTTACCCTGGTGATATAATTCCTTTTACCAGAAGACCACTTTTCTTGATTATTGATAGTGACAACAGCCATGCATTCAAGgcaggtttgtcaaaacttgtatataacttgctacactgcttcaaattattctacagcagtgtatagcttctaaactaggtgttacttctttcaaaagatg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0191g00140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os09g29470.1 (Oryza sativa), 5'ss of exon 6
GTTCAAATAATAACCTTTACCCTGGTGATATAATTCCTTTTACCAGAAGACCACTTTTCTTGATTATTGATAGTGACAACAGCCATGCATTCAAGgcaggtttgtcaaaacttgtatataacttgctacactgcttcaaattattctacagcagtgtat-agcttctaaactaggtgttacttctttcaaaagatg-
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GTCCAAACAAT---CTTTATCCAGAAGATCTGATTCCCTTTACAAGATATCCACTATTCCTTGTTATCGATAGTGAAAATAGTCATGCATTCAAGgcaggtttgtcagaacttaatcttagcttggtaga-tgaaaatcattatcatg-agtattttgttatttttcagagccaaacttactaccctggattgccca
upper sequence: Vv07s0191g00140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os09g29470.3 (Oryza sativa), 5'ss of exon 6
GTTCAAATAATAACCTTTACCCTGGTGATATAATTCCTTTTACCAGAAGACCACTTTTCTTGATTATTGATAGTGACAACAGCCATGCATTCAAGgcaggtttgtcaaaacttgtatataacttgctacactgcttcaaattattctacagcagtgtat-agcttctaaactaggtgttacttctttcaaaagatg-----
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GTCCAAACAAT---CTTTATCCAGAAGATCTGATTCCCTTTACAAGATATCCACTATTCCTTGTTATCGATAGTGAAAATAGTCATGCATTCAAGGCAGgtttgtcagaacttaatcttagcttggtaga-tgaaaatcattatcatg-agtattttgttatttttcagagccaaacttactaccctggattgcccatgcc
upper sequence: Vv07s0191g00140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G115304_T01 (Zea mays), 5'ss of exon 6
GTTCAAATAATAACCTTTACCCTGGTGATATAATTCCTTTTACCAGAAGACCACTTTTCTTGATTATTGATAGTGACAACAGCCATGCATTCAAGgcaggtttgtcaaaacttgtatataacttgctacactgcttcaaattattctacagcagtgtatagcttctaaactaggtgttacttctttcaaaagatg-------
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GTCCAAACAAT---CTTTATCCAGATGATCTAATTCCATTTACAAGATATCCACTGTTCCTTGTAATTGATAGTGAAAATAGCCATGCATTCAAGgcaggtttgtcagaacttaatcttggcttgtagaagaaaacca--ttaccat-cggcactctattgctttt---ctaaa-gtaacatgtttaccaggttgcccatgc
upper sequence: Vv07s0191g00140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G14190.1 (Glycine max), 5'ss of exon 7
GTTCAAATAATAACCTTTACCCTGGTGATATAATTCCTTTTACCAGAAGACCACTTTTCTTGATTATTGATAGTGACAACAGCCATGCATTCAAGgcaggtttgtcaaaacttgtatataacttgctacactgcttcaaa--ttattctacagcagtgtatagcttctaaactaggtgttacttctttcaaaagatg
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GTTTAAATAAT---CTCTACCCTGGCGATCTTATCCCCTTTACTAGGAAACCTCTTTTCTTAATTATTGACAGTGATAACAGCCATGCATTCAAGGCAGgtttgtcaaaactcagaacttgtgtataagttgcctgtgaactttgttagatagagctgttcag----------------------------------
upper sequence: Vv07s0191g00140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA05G30980.1 (Glycine max), 5'ss of exon 6
GTTCAAATAATAACCTTTACCCTGGTGATATAATTCCTTTTACCAGAAGACCACTTTTCTTGATTATTGATAGTGACAACAGCCATGCATTCAAGgcaggtttgtcaaaact-------tgtatataacttgc---tacactgcttcaaattattctaca-gcagtgtatagcttctaaactaggtgttacttctttcaaaagatg
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GTTCAAATAAT---CTCTACCCTGGTGATCTTATCCCCTTCACTAGGAAACCTCTTTTCCTGATTATTGACAGTGATAACAGCCATGCATTCAAGgcaggtttgtcaaaactcagaacttgtgtataagttgcctgtgaactttgttaggcggagctgttcaggatatttattccttgaatctaattttacttgt-----------
upper sequence: Vv07s0191g00140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT4G40050.1 (Arabidopsis thaliana), 5'ss of exon 6
GTTCAAATAATAACCTTTACCCTGGTGATATAATTCCTTTTACCAGAAGACCACTTTTCTTGATTATTGATAGTGACAACAGCCATGCATTCAAGgcaggtttgtcaaaactt-gtatataacttg-ctacactgcttcaaattattctacagcag-tgtatagcttctaa-actaggtgttacttctttcaaaagatg----
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GTTCAAACAA---CCTTTACCCTGGTGACCTAATCCCTTTTACACGGAAACCACTTTTCTTGATCATTGATAGCGACACTAGCCGTGCATTCAAGgcaggtttgtcataacttagtgtttcatttctctggagagtctgatagtttctctcagtaactatgcgatatttgctgatggattgtaataaaataaacaaactccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161709160|gb|FC061370.1|FC061370EST: GAAGACCACTTTTCTTGATTATTGATAGTGACAACAGCCATGCATTCAAG GATTTACACGGTGCAGAAAGGGGAGAGACGGCTGCCCTACTTCTTTCCCCT
genomic: GAAGACCACTTTTCTTGATTATTGATAGTGACAACAGCCATGCATTCAAGgcaggtttgt ... ttattttcagGATTTACATGGTGCAGAAAGGGGAGAGACGGCTGCCCTACTTCTTTCCCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCAAATAATAACCTTTACCCTGGTGATATAATTCCTTTTACCAGAAGACCACTTTTCTTGATTATTGATAGTGACAACAGCCATGCATTCAAGgcaggtttgtcaaaacttgtatataacttgctacactgcttcaaattattctacagcagtgtatagcttctaaactaggtgttacttctttcaaaagatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaga