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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTACTCTTACCGCAAAGTTCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgtgcttcaagtttgtgagcccactaaaactgtctaggaagctgaaatccaagggcagatatacccttaggttggtttgtttgaaatatatta...

Basic information

species Vitis vinifera
transcript Vv07s0151g00860.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0151g00860.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA03G23870.1 (Glycine max), 5'ss of exon 6
GCTTACTCTTACCGCAAAGTTCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgtgcttcaagtttgtgagcccactaaaactgtctaggaagctgaaatccaagggcagatatacccttaggttggtttg---tttgaaatatatta--
|| || |||||||||||||||||||| |||||||||||| | || || | ||| || ||||| ||| |||||||||||      ||| |||||        |  || |    |   | || |  |     |   |   |  | ||  |    | ||   | ||   | | | |  
GCATATTCTTACCGCAAAGTTCTTCCAGTACTCTCCAAGGACTATCACGTCATAGCCTTTGACTGGCTAGgtaagatca-----caattttgtattgaatttgtaattaaaaattgatcttactttatttgctggggttctctttgtgacattctgaactatgctttgtgtcatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351055280|gb|FQ441878.1|FQ441878
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCCTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|27580560|gb|CB003255.1|CB003255
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|351054424|gb|FQ450507.1|FQ450507
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|352790943|gb|FQ479936.1|FQ479936
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|351054345|gb|FQ450428.1|FQ450428
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|351053960|gb|FQ441726.1|FQ441726
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|351038630|gb|FQ464496.1|FQ464496
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|351041932|gb|FQ456142.1|FQ456142
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|351044390|gb|FQ452942.1|FQ452942
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|351056109|gb|FQ453571.1|FQ453571
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|351057496|gb|FQ440090.1|FQ440090
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|351044595|gb|FQ443126.1|FQ443126
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|27579662|gb|CB002357.1|CB002357
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|352790264|gb|FQ481463.1|FQ481463
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|351054568|gb|FQ462675.1|FQ462675
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAACCCTCAACC
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCC-TCAACC
EST: gi|352798862|gb|FQ478497.1|FQ478497
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|32250149|gb|CD715968.1|CD715968
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|351032736|gb|FQ462450.1|FQ462450
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|351039837|gb|FQ464875.1|FQ464875
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|351037996|gb|FQ460738.1|FQ460738
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGCTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|351044516|gb|FQ443047.1|FQ443047
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|351054394|gb|FQ450477.1|FQ450477
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|352789760|gb|FQ478575.1|FQ478575
EST:     TCCTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|351054311|gb|FQ450394.1|FQ450394
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|351037499|gb|FQ460698.1|FQ460698
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|351039712|gb|FQ464750.1|FQ464750
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|351038914|gb|FQ457589.1|FQ457589
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|351039029|gb|FQ457704.1|FQ457704
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|351057344|gb|FQ454026.1|FQ454026
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|351055936|gb|FQ453397.1|FQ453397
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
EST: gi|351053868|gb|FQ441634.1|FQ441634
EST:     TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAG                         GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT
genomic: TCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgt ... tcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTTACTCTTACCGCAAAGTTCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgtgcttcaagtttgtgagcccactaaaactgtctaggaagctgaaatccaagggcagatatacccttaggttggtttgtttgaaatatatta

- - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatccaa