1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATGGATCGCATACTTGCTGCATATCGGAAGTCCTCAAAACAGTGGTCATCCACATTGAATAAGCTAGCTCAAGgtgcagccctcctctcctactctttttctgttgttttagtgcatttcttttcacatgttatcctttatgtcattttcttattcttctattgcttcacatgcattgcag
species | Vitis vinifera |
transcript | Vv07s0151g00550.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCGGAAGTCCTCAAAACAGTGGTCATCCACATTGAATAAGCTAGCTCAAG TGCGACAAAGAGGTCGAAAGCGCACAATGGTTGGCTAAGCCACCTTCAATAEST: gi|37188657|gb|CF608006.1|CF608006
genomic: TCGGAAGTCCTCAAAACAGTGGTCATCCACATTGAATAAGCTAGCTCAAGgtgcagccct ... tgcattgcagTGCGACAAAGAGGTCGAAAGCGCACAATGGTTGGCTAAGCCACCTTCAATA
EST: TCGGAAGTCCTCAAAACAGTGGTCATCCACATTGAATAAGCTAGCTCAAG TGCGACAAAGAGGTCGAAAGCGCACAATGGTTGGGTAAGCCACCTTCAATAEST: gi|28958875|gb|CB339437.1|CB339437
genomic: TCGGAAGTCCTCAAAACAGTGGTCATCCACATTGAATAAGCTAGCTCAAGgtgcagccct ... tgcattgcagTGCGACAAAGAGGTCGAAAGCGCACAATGGTTGGCTAAGCCACCTTCAATA
EST: TCGGAAGTCCTCAAAACAGTGGTCATCCCCATTGAATAAGCTAGCTCAAG TGCGACGAAGAGGTCGAAAGCGCCCAATGGTTGGTTAAGCCCCCTTCAATAEST: gi|26257835|gb|CA808898.1|CA808898
genomic: TCGGAAGTCCTCAAAACAGTGGTCATCCACATTGAATAAGCTAGCTCAAGgtgcagccct ... tgcattgcagTGCGACAAAGAGGTCGAAAGCGCACAATGGTTGGCTAAGCCACCTTCAATA
EST: TCGGAAGTCCTCAAAACAGTGGTCATCCACATTGAATAAGCTAGCTCAAG TGCGACAAAGAGGTCGAAAGCGCACAATGGTTGGCTAAGCCACCTTCAATAEST: gi|26258595|gb|CA809658.1|CA809658
genomic: TCGGAAGTCCTCAAAACAGTGGTCATCCACATTGAATAAGCTAGCTCAAGgtgcagccct ... tgcattgcagTGCGACAAAGAGGTCGAAAGCGCACAATGGTTGGCTAAGCCACCTTCAATA
EST: TCGGAAGTCCTCAAAACAGTGGTCATCCACATTGAATAAGCTAGCTCAAG TGCGACAAAGAGGTCGAAAGCGCACAATG
genomic: TCGGAAGTCCTCAAAACAGTGGTCATCCACATTGAATAAGCTAGCTCAAGgtgcagccct ... tgcattgcagTGCGACAAAGAGGTCGAAAGCGCACAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGATCGCATACTTGCTGCATATCGGAAGTCCTCAAAACAGTGGTCATCCACATTGAATAAGCTAGCTCAAGgtgcagccctcctctcctactctttttctgttgttttagtgcatttcttttcacatgttatcctttatgtcattttcttattcttctattgcttcacatgcattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA