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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCTTTCAGAGGAAGAGATACGGAGCTTTATGTCTCAAGTGCTGCAAGGACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTGgtatgaagttgacttctacaaaattatgcacttgtgcagtctatgatttggaattttatttgcatcttcatgaagaattgtgtaggctttatctaatagtgtatattatcaaacaccatttctgtcttcaag

Basic information

species Vitis vinifera
transcript Vv07s0151g00350.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0151g00350.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G045241_T07 (Zea mays), 5'ss of exon 2
CCCCTTTCAGAGGAAGAGATACGGAGCTTTATGTCTCAAGTGCTGCAAGGACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTGgta-tgaagttgacttctacaaaattatgcacttgtgcagtctatgatttgg--aattttatttgcatcttcatgaagaattgtgtaggctttatctaatagtgtatattatcaaacaccatttctgtcttcaag
 |  |  | ||    || ||| ||| |||||||   ||  | |||||||| |||||| | |||||||| ||||| |||||||| || || ||||||||||||| ||    |   |  ||  | |||  | | || |    ||| |  ||  |  ||  | ||| |  | ||       | ||||| ||                                               
GCTTTCCCTGAAAGGGATATAAGGAACTTTATGGTCCAGATACTGCAAGGTCTTGCATATATGCATAATAATGGGTATTTTCACCGTGATTTAAAACCTGgtaatgtgtcttgttgatattacatt--ggaattatcttatctttctttctgtcaaaataattagtttttttccttctatttgtgcag-----------------------------------------------

upper sequence: Vv07s0151g00350.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G10820.2 (Glycine max), 5'ss of exon 7
CCCCTTTCAGAGGAAGAGATACGGAGCTTTATGTCTCAAGTGCTGCAAGGACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTGgtatgaagttgacttctacaaaattatgcacttgtgcagtctatgatttggaattttatttgcatcttcatgaagaat-tgtgtaggctttatctaatagtgtatattatcaaacaccatttctgtcttcaag
||| |||||||||||||||||||| ||||||||   |||||||| |||||||||   |||||||| || || ||||  ||||||||||| ||||||||||||      | | | | || |  |||   || ||    | | | ||||     ||| | |||  |  |||  |   ||| ||| ||     |       | | |    | |     |   ||||||   |  ||
CCCTTTTCAGAGGAAGAGATACGGTGCTTTATGAGGCAAGTGCTACAAGGACTTAGTCACATGCACAAGAAAGGATTCTTTCATCGGGATTTAAAACCTGgt------taggcatatatatgattt--catttagcaaatttctgatggtatattgtgtttatactttccagttcaatctgtctaaaaagtcatatggattttgatcttttgggaatgttttctgctatacag

upper sequence: Vv07s0151g00350.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA03G21610.2 (Glycine max), 5'ss of exon 6
CCCCTTTCAGAGGAAGAGATACGGAGCTTTATGTCTCAAGTGCTGCAAGGACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTGgtatgaagttgacttctacaaaattatgcacttgtgcagtctatgatttggaattttatttgcatcttcatgaagaat-tgtgtaggct-ttatctaatagtgtatattatcaaacaccatttctgtcttcaag
||| |||||||||||||||||||| ||||||||   |||||||| |||||||||   |||||||| || || ||||  ||||||||||| ||||||||||||  |       | | || |  |||   || ||    | | |||||| |    || | |||  |  |||  |   | | ||| ||     | || |     |  || || |   | |   ||||||   |  ||
CCCTTTTCAGAGGAAGAGATACGGTGCTTTATGAGGCAAGTGCTACAAGGACTTAGTCACATGCACAAGAAAGGATTCTTTCATCGGGATTTAAAACCTGgtgagg------catatatatgattt--catttagcgaatttatgatgttatgttgtgtttatactttccagtccagtctgtctaaaaggtcatgtggatcttgatcttttggga-atgttttctgctatacag

upper sequence: Vv07s0151g00350.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT4G13020.1 (Arabidopsis thaliana), 5'ss of exon 6
CCCCTTTCAGAGGAAGAGATACGGAGCTTTATGTCTCAAGTGCTGCAAGGACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTGgtatgaagttgacttctacaaaattatgcacttgtgcagtctatgatttggaattttatttgcatcttcatgaagaattgtgtaggctttatctaatagtgtatattatcaaacaccatttctgtcttcaag
||  |||| || | ||| ||| | || |||||||||||  |||||||||| || ||||||||||||||||| || ||||| ||||| ||| | ||||||||||||   | |   | |  |      || | |  |  |    ||| |||    | || |     ||||    |  | || |||   || | ||| |                                    
CCTTTTTCTGAAGGAGAAATAAGAAGTTTTATGTCTCAGATGCTGCAAGGGCTCGCACACATGCATAAAAACGGTTATTTCCATCGAGACCTGAAACCTGgtatgttttggtactttgtat-----tgtattaattgaa---atggttttcgctctt-tgaatgtcttataaacaagttttgtt--ctgtttctgaag----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351053929|gb|FQ441695.1|FQ441695
EST:     ACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTG                         AGAATTTGCTGGTGACAAACAATGTGATTAAAATTGCTGACTTCGGACTGG
genomic: ACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTGgtatgaagtt ... tgtcttcaagAGAATTTGCTGGTGACAAACAATGTGATTAAAATTGCTGACTTCGGACTGG
EST: gi|352794086|gb|FQ479328.1|FQ479328
EST:     ACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACTTG                         AGAATTTGCTGGTGACAAACAATGTGATTAAAATTGCTGACTTCGGACTGG
genomic: ACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTGgtatgaagtt ... tgtcttcaagAGAATTTGCTGGTGACAAACAATGTGATTAAAATTGCTGACTTCGGACTGG
EST: gi|351036041|gb|FQ463886.1|FQ463886
EST:     ACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTG                         AGAATTTGCTGGTGACAAACAATGTGATTAAAATTGCTGACTTCGGACTGG
genomic: ACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTGgtatgaagtt ... tgtcttcaagAGAATTTGCTGGTGACAAACAATGTGATTAAAATTGCTGACTTCGGACTGG
EST: gi|352794210|gb|FQ479452.1|FQ479452
EST:     ACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTG                         AGAATTTGCTGGTGACAAACAATGTGATTAAAATTGCTGACTTCGGACTGG
genomic: ACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTGgtatgaagtt ... tgtcttcaagAGAATTTGCTGGTGACAAACAATGTGATTAAAATTGCTGACTTCGGACTGG
EST: gi|351046353|gb|FQ452969.1|FQ452969
EST:     ACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTG                         AGAATTTGCTGGTGACAAACAATGTGATTAAAATTGCTGACTTCGGACTGG
genomic: ACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTGgtatgaagtt ... tgtcttcaagAGAATTTGCTGGTGACAAACAATGTGATTAAAATTGCTGACTTCGGACTGG
EST: gi|352794331|gb|FQ481562.1|FQ481562
EST:     ACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTG                         AGAATTTGCTGGTGACAAACAATGTGATTAAAATTGCTGACTTCGGACTGG
genomic: ACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTGgtatgaagtt ... tgtcttcaagAGAATTTGCTGGTGACAAACAATGTGATTAAAATTGCTGACTTCGGACTGG
EST: gi|352794414|gb|FQ481645.1|FQ481645
EST:     ACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTG                         AGAATTTGCTGGTGACAAGCAATGTGATTAAAATTGCTGACTTCGGACTGG
genomic: ACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTGgtatgaagtt ... tgtcttcaagAGAATTTGCTGGTGACAAACAATGTGATTAAAATTGCTGACTTCGGACTGG
EST: gi|351047787|gb|FQ459007.1|FQ459007
EST:     ACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTG                         AGAATTTGCTGGTGACAAACAATGTGATTAAAATTGCTGACTTCGGACTGG
genomic: ACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTGgtatgaagtt ... tgtcttcaagAGAATTTGCTGGTGACAAACAATGTGATTAAAATTGCTGACTTCGGACTGG
EST: gi|37190302|gb|CF609651.1|CF609651
EST:     ACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTG                         AGAATTTGCTGGTGACAAACAATGTGATTAAAATTGCTGACTTCGGACTGG
genomic: ACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTGgtatgaagtt ... tgtcttcaagAGAATTTGCTGGTGACAAACAATGTGATTAAAATTGCTGACTTCGGACTGG